MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:47.9 nTPM
HPA Brain:37.8 nTPM
GTEx:47.9 nTPM
FANTOM5:17.0 Scaled Tags Per Million
Pig:47.4 nTPM
Mouse:85.1 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 37.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 25.6
1827 Male, age 72, unknown 30.2
2219 Male, age 76, both hemispheres 27.4
2586 Male, age 75, left hemisphere 27.2
2411 Female, age 72, unknown 27.0
2666 Male, age 74, left hemisphere 26.5
1870 Female, age 42, unknown 25.2
1833 Male, age 53, unknown 25.1
1830 Male, age 51, unknown 23.0
2019 Male, age 18, unknown 22.5
2828 Female, age 72, unknown 22.2
Dorsal raphe nucleus
nTPM: 26.6
2047 Male, age 72, unknown 31.2
2298 Female, age 72, unknown 28.7
1828 Male, age 53, unknown 27.0
2750 Male, age 76, both hemispheres 26.6
2016 Female, age 72, unknown 19.3
Inferior colliculus
nTPM: 28.0
2097 Female, age 72, unknown 30.1
2849 Male, age 72, unknown 28.5
1890 Male, age 53, unknown 27.1
1848 Female, age 42, unknown 26.4
Median raphe nucleus
nTPM: 37.8
2220 Male, age 76, midline 37.8
Periaquaductal grey, anterior
nTPM: 28.8
1947 Male, age 18, unknown 34.9
1795 Male, age 51, unknown 26.7
2502 Female, age 75, unknown 24.9
Periaquaductal grey, dorsal
nTPM: 24.1
1840 Male, age 53, unknown 28.9
1831 Male, age 72, unknown 24.2
2850 Male, age 76, both hemispheres 22.1
2464 Female, age 72, unknown 21.3
Periaquaductal grey, lateral
nTPM: 20.4
2053 Male, age 18, unknown 22.4
2140 Male, age 76, both hemispheres 21.4
2272 Male, age 74, both hemispheres 17.3
Pretectal area
nTPM: 25.5
1816 Male, age 51, unknown 29.1
2007 Male, age 72, unknown 28.8
1817 Female, age 42, unknown 28.4
1944 Female, age 72, unknown 26.3
2224 Female, age 72, unknown 26.2
2667 Female, age 75, unknown 26.2
2825 Male, age 18, unknown 24.6
1815 Male, age 53, unknown 24.2
2316 Male, age 76, right hemisphere 24.1
2407 Male, age 75, both hemispheres 23.3
2273 Male, age 74, both hemispheres 19.0
Red nucleus
nTPM: 23.9
1821 Female, age 72, unknown 28.7
2588 Male, age 74, left hemisphere 27.8
2584 Male, age 75, left hemisphere 25.9
2769 Male, age 72, unknown 24.5
2503 Female, age 72, unknown 23.8
2227 Male, age 72, unknown 23.4
1904 Male, age 53, unknown 23.3
1954 Female, age 42, unknown 22.8
2785 Male, age 18, unknown 22.5
1865 Male, age 51, unknown 22.1
2725 Female, age 75, unknown 22.1
2823 Male, age 76, right hemisphere 19.8
Substantia nigra
nTPM: 30.2
1916 Female, age 42, unknown 37.3
1851 Male, age 51, unknown 35.5
2665 Male, age 74, both hemispheres 32.0
2583 Male, age 75, right hemisphere 30.4
1889 Female, age 72, unknown 29.4
2409 Female, age 72, unknown 28.8
2241 Male, age 72, unknown 28.7
2699 Male, age 18, unknown 26.9
1941 Male, age 53, unknown 26.7
2590 Female, age 75, unknown 26.2
Superior colliculus
nTPM: 25.2
2668 Female, age 75, unknown 33.8
1796 Male, age 53, unknown 29.9
1895 Male, age 76, right hemisphere 29.4
1839 Male, age 51, unknown 26.6
2664 Male, age 75, both hemispheres 25.7
2261 Male, age 18, unknown 25.1
2587 Male, age 74, left hemisphere 23.9
2087 Female, age 72, unknown 22.5
1913 Female, age 42, unknown 19.9
1995 Male, age 72, unknown 15.4
Ventral tegmental area
nTPM: 28.3
1915 Female, age 42, unknown 31.6
2410 Female, age 72, unknown 30.8
2218 Male, age 76, both hemispheres 30.0
2223 Female, age 72, unknown 29.7
1942 Male, age 51, unknown 24.4
2021 Male, age 53, unknown 23.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 47.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 47.9
Samples: 139

Max nTPM: 121.5
Min nTPM: 12.6
Std nTPM: 20.5
Median nTPM: 44.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 121.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 101.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 97.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 96.3
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 93.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 91.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 91.6
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 91.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 86.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 81.7
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 81.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 17.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 17.0
FF:10158-103A5 76 years, female 17.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 47.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 38.2
Samples: 4

Max nTPM: 57.9
Min nTPM: 22.5
Sample A Female 57.9
Sample B Female 31.1
Sample C Male 41.4
Sample D Male 22.5
Midbrain
nTPM: 47.5
Samples: 4

Max nTPM: 58.9
Min nTPM: 32.9
Sample A Female 32.9
Sample B Female 42.5
Sample C Male 58.9
Sample D Male 55.5
Periaqueductal gray
nTPM: 39.6
Samples: 3

Max nTPM: 47.4
Min nTPM: 34.1
Sample B Female 37.2
Sample C Male 47.4
Sample D Male 34.1
Superior colliculi
nTPM: 45.1
Samples: 4

Max nTPM: 58.7
Min nTPM: 29.9
Sample A Female 58.7
Sample B Female 29.9
Sample C Male 49.3
Sample D Male 42.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 85.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 85.1
Samples: 4

Max nTPM: 93.6
Min nTPM: 76.7
Sample A Male 93.6
Sample B Male 81.6
Sample C Female 76.7
Sample D Female 88.4

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