MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.3 nTPM
HPA Brain:35.9 nTPM
GTEx:9.3 nTPM
FANTOM5:14.3 Scaled Tags Per Million
Pig:24.2 nTPM
Mouse:25.8 nTPM
Allen mouse:4.4 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 35.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.0
2019 Male, age 18, unknown 41.2
1827 Male, age 72, unknown 26.8
2828 Female, age 72, unknown 21.9
1870 Female, age 42, unknown 15.2
2411 Female, age 72, unknown 14.8
2219 Male, age 76, both hemispheres 12.1
2586 Male, age 75, left hemisphere 10.5
2666 Male, age 74, left hemisphere 9.6
1830 Male, age 51, unknown 9.2
1833 Male, age 53, unknown 8.3
Dorsal raphe nucleus
nTPM: 12.4
2298 Female, age 72, unknown 19.6
2750 Male, age 76, both hemispheres 14.9
2047 Male, age 72, unknown 9.5
1828 Male, age 53, unknown 9.3
2016 Female, age 72, unknown 8.9
Inferior colliculus
nTPM: 16.1
2097 Female, age 72, unknown 25.3
1890 Male, age 53, unknown 14.1
1848 Female, age 42, unknown 12.9
2849 Male, age 72, unknown 12.0
Median raphe nucleus
nTPM: 15.0
2220 Male, age 76, midline 15.0
Periaquaductal grey, anterior
nTPM: 19.6
1795 Male, age 51, unknown 30.1
2502 Female, age 75, unknown 19.1
1947 Male, age 18, unknown 9.6
Periaquaductal grey, dorsal
nTPM: 18.4
1831 Male, age 72, unknown 24.6
1840 Male, age 53, unknown 19.1
2850 Male, age 76, both hemispheres 16.4
2464 Female, age 72, unknown 13.5
Periaquaductal grey, lateral
nTPM: 22.9
2272 Male, age 74, both hemispheres 32.0
2053 Male, age 18, unknown 18.6
2140 Male, age 76, both hemispheres 17.9
Pretectal area
nTPM: 35.9
1816 Male, age 51, unknown 63.3
2007 Male, age 72, unknown 62.9
1817 Female, age 42, unknown 57.5
1944 Female, age 72, unknown 46.9
1815 Male, age 53, unknown 40.9
2273 Male, age 74, both hemispheres 28.2
2667 Female, age 75, unknown 27.1
2224 Female, age 72, unknown 22.9
2407 Male, age 75, both hemispheres 20.4
2316 Male, age 76, right hemisphere 12.9
2825 Male, age 18, unknown 11.6
Red nucleus
nTPM: 10.8
2785 Male, age 18, unknown 36.7
2588 Male, age 74, left hemisphere 15.0
2584 Male, age 75, left hemisphere 11.8
2823 Male, age 76, right hemisphere 11.7
2503 Female, age 72, unknown 8.2
1904 Male, age 53, unknown 7.6
2769 Male, age 72, unknown 7.0
2227 Male, age 72, unknown 6.9
1865 Male, age 51, unknown 6.8
2725 Female, age 75, unknown 6.7
1821 Female, age 72, unknown 6.4
1954 Female, age 42, unknown 5.2
Substantia nigra
nTPM: 9.4
1889 Female, age 72, unknown 33.8
1941 Male, age 53, unknown 14.7
2583 Male, age 75, right hemisphere 9.6
2665 Male, age 74, both hemispheres 8.1
2590 Female, age 75, unknown 7.6
1851 Male, age 51, unknown 6.2
1916 Female, age 42, unknown 4.7
2409 Female, age 72, unknown 4.0
2241 Male, age 72, unknown 3.4
2699 Male, age 18, unknown 2.3
Superior colliculus
nTPM: 23.2
2087 Female, age 72, unknown 31.4
2261 Male, age 18, unknown 30.7
2668 Female, age 75, unknown 30.6
1913 Female, age 42, unknown 25.9
1995 Male, age 72, unknown 22.8
1796 Male, age 53, unknown 21.6
2587 Male, age 74, left hemisphere 18.7
2664 Male, age 75, both hemispheres 18.6
1895 Male, age 76, right hemisphere 16.8
1839 Male, age 51, unknown 14.8
Ventral tegmental area
nTPM: 9.5
2218 Male, age 76, both hemispheres 11.3
2021 Male, age 53, unknown 10.2
1942 Male, age 51, unknown 9.9
2410 Female, age 72, unknown 9.7
2223 Female, age 72, unknown 8.1
1915 Female, age 42, unknown 7.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 9.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.3
Samples: 139

Max nTPM: 43.2
Min nTPM: 1.8
Std nTPM: 5.8
Median nTPM: 7.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 43.2
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 29.7
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 29.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 28.8
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 26.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 20.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 20.4
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 19.4
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 19.1
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 16.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 16.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 14.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 14.3
FF:10158-103A5 76 years, female 14.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 24.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 10.3
Samples: 4

Max nTPM: 18.3
Min nTPM: 4.0
Sample A Female 18.3
Sample B Female 6.9
Sample C Male 12.0
Sample D Male 4.0
Midbrain
nTPM: 24.2
Samples: 4

Max nTPM: 62.6
Min nTPM: 6.1
Sample A Female 6.1
Sample B Female 11.8
Sample C Male 62.6
Sample D Male 16.2
Periaqueductal gray
nTPM: 7.8
Samples: 3

Max nTPM: 10.2
Min nTPM: 6.6
Sample B Female 6.6
Sample C Male 10.2
Sample D Male 6.6
Superior colliculi
nTPM: 24.0
Samples: 4

Max nTPM: 49.1
Min nTPM: 13.7
Sample A Female 17.6
Sample B Female 13.7
Sample C Male 49.1
Sample D Male 15.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 25.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 25.8
Samples: 4

Max nTPM: 28.4
Min nTPM: 23.2
Sample A Male 23.2
Sample B Male 25.5
Sample C Female 28.4
Sample D Female 26.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.4
70203525 Antisense, RP_050519_01_F05, Mouse strain C57BL/6J (56 days, male) 4.4
71670711 Antisense, RP_050519_01_F05, Mouse strain C57BL/6J (56 days, male) 3.2

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