MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:183.4 nTPM
HPA Brain:274.7 nTPM
GTEx:183.4 nTPM
FANTOM5:240.0 Scaled Tags Per Million
Pig:152.5 nTPM
Mouse:34.8 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 274.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 141.9
2828 Female, age 72, unknown 228.1
2586 Male, age 75, left hemisphere 183.6
2666 Male, age 74, left hemisphere 151.5
2019 Male, age 18, unknown 147.4
1870 Female, age 42, unknown 134.6
2411 Female, age 72, unknown 131.6
1827 Male, age 72, unknown 130.4
1833 Male, age 53, unknown 124.1
1830 Male, age 51, unknown 112.9
2219 Male, age 76, both hemispheres 74.5
Dorsal raphe nucleus
nTPM: 224.4
2016 Female, age 72, unknown 276.8
2298 Female, age 72, unknown 265.3
1828 Male, age 53, unknown 261.0
2047 Male, age 72, unknown 196.8
2750 Male, age 76, both hemispheres 122.2
Inferior colliculus
nTPM: 130.4
2097 Female, age 72, unknown 176.2
2849 Male, age 72, unknown 121.0
1890 Male, age 53, unknown 114.4
1848 Female, age 42, unknown 110.0
Median raphe nucleus
nTPM: 149.4
2220 Male, age 76, midline 149.4
Periaquaductal grey, anterior
nTPM: 163.1
1795 Male, age 51, unknown 214.8
2502 Female, age 75, unknown 148.0
1947 Male, age 18, unknown 126.4
Periaquaductal grey, dorsal
nTPM: 223.3
2850 Male, age 76, both hemispheres 285.0
1840 Male, age 53, unknown 231.5
1831 Male, age 72, unknown 214.0
2464 Female, age 72, unknown 162.6
Periaquaductal grey, lateral
nTPM: 274.7
2140 Male, age 76, both hemispheres 299.8
2272 Male, age 74, both hemispheres 273.8
2053 Male, age 18, unknown 250.6
Pretectal area
nTPM: 201.6
2273 Male, age 74, both hemispheres 437.9
2224 Female, age 72, unknown 242.7
1944 Female, age 72, unknown 215.7
2667 Female, age 75, unknown 195.8
2316 Male, age 76, right hemisphere 179.6
1816 Male, age 51, unknown 177.6
2825 Male, age 18, unknown 170.8
1815 Male, age 53, unknown 169.5
2407 Male, age 75, both hemispheres 164.3
1817 Female, age 42, unknown 148.6
2007 Male, age 72, unknown 115.6
Red nucleus
nTPM: 145.7
2725 Female, age 75, unknown 234.3
2503 Female, age 72, unknown 169.3
1821 Female, age 72, unknown 154.5
2769 Male, age 72, unknown 149.8
2227 Male, age 72, unknown 146.0
2785 Male, age 18, unknown 142.9
2823 Male, age 76, right hemisphere 141.5
1865 Male, age 51, unknown 136.8
1954 Female, age 42, unknown 135.0
1904 Male, age 53, unknown 128.4
2584 Male, age 75, left hemisphere 112.0
2588 Male, age 74, left hemisphere 97.2
Substantia nigra
nTPM: 210.8
2699 Male, age 18, unknown 277.5
1851 Male, age 51, unknown 267.8
1916 Female, age 42, unknown 263.8
2241 Male, age 72, unknown 248.6
2409 Female, age 72, unknown 213.9
1941 Male, age 53, unknown 191.1
2590 Female, age 75, unknown 189.9
2583 Male, age 75, right hemisphere 167.7
1889 Female, age 72, unknown 160.7
2665 Male, age 74, both hemispheres 126.7
Superior colliculus
nTPM: 183.1
1995 Male, age 72, unknown 273.4
2087 Female, age 72, unknown 221.5
1913 Female, age 42, unknown 213.5
2587 Male, age 74, left hemisphere 198.1
1796 Male, age 53, unknown 195.9
2664 Male, age 75, both hemispheres 194.9
2261 Male, age 18, unknown 183.3
1839 Male, age 51, unknown 135.2
2668 Female, age 75, unknown 120.0
1895 Male, age 76, right hemisphere 95.6
Ventral tegmental area
nTPM: 194.9
1915 Female, age 42, unknown 250.8
2021 Male, age 53, unknown 220.0
2410 Female, age 72, unknown 198.6
1942 Male, age 51, unknown 190.0
2223 Female, age 72, unknown 155.7
2218 Male, age 76, both hemispheres 154.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 183.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 183.4
Samples: 139

Max nTPM: 454.5
Min nTPM: 52.0
Std nTPM: 73.9
Median nTPM: 169.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 454.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 429.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 379.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 365.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 354.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 341.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 340.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 321.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 313.4
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 313.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 301.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 240.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 240.0
FF:10158-103A5 76 years, female 240.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 152.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 136.9
Samples: 4

Max nTPM: 163.0
Min nTPM: 110.8
Sample A Female 163.0
Sample B Female 110.8
Sample C Male 135.6
Sample D Male 138.0
Midbrain
nTPM: 131.5
Samples: 4

Max nTPM: 205.4
Min nTPM: 82.5
Sample A Female 205.4
Sample B Female 85.4
Sample C Male 152.6
Sample D Male 82.5
Periaqueductal gray
nTPM: 69.4
Samples: 3

Max nTPM: 82.2
Min nTPM: 58.7
Sample B Female 67.3
Sample C Male 82.2
Sample D Male 58.7
Superior colliculi
nTPM: 152.5
Samples: 4

Max nTPM: 226.9
Min nTPM: 108.3
Sample A Female 150.9
Sample B Female 124.0
Sample C Male 226.9
Sample D Male 108.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 34.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 34.8
Samples: 4

Max nTPM: 38.1
Min nTPM: 32.7
Sample A Male 35.2
Sample B Male 33.2
Sample C Female 32.7
Sample D Female 38.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
77454961 Antisense, RP_070129_01_E04, Mouse strain C57BL/6J (56 days, male) 0.9
68302203 Antisense, RP_041130_02_D06, Mouse strain C57BL/6J (56 days, male) 0.8
77866850 Antisense, RP_070129_01_E04, Mouse strain C57BL/6J (56 days, male) 0.5
1181 Antisense, RP_Baylor_103301, Mouse strain C57BL/6J (56 days, male) 0.1

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