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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
494.2
nTPM
Monaco:
2017.7
nTPM
Schmiedel:
50.2
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
494.2
HPA sample
nTPM
Memory B-cell nTPM: 494.2
Samples: 6
Max nTPM: 632.4
Min nTPM: 427.8
P10809_1017
438.3
P10809_1025
632.4
P10809_1044
427.8
P10809_1063
478.8
P10809_1092
525.4
P10809_1105
462.7
Naive B-cell nTPM: 394.9
Samples: 6
Max nTPM: 730.3
Min nTPM: 226.1
P10809_1011
226.1
P10809_1029
411.0
P10809_1048
730.3
P10809_1067
308.7
P10809_1091
339.5
P10809_1104
353.8
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
2017.7
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 543.1
Samples: 4
Max nTPM: 703.7
Min nTPM: 461.6
RHH5310_R3677
703.7
RHH5218_R3590
461.6
RHH5247_R3619
527.4
RHH5276_R3648
479.8
Naive B-cell nTPM: 315.1
Samples: 4
Max nTPM: 433.9
Min nTPM: 199.9
RHH5308_R3675
321.1
RHH5216_R3588
433.9
RHH5245_R3617
199.9
RHH5274_R3646
305.6
Non-switched memory B-cell nTPM: 444.0
Samples: 4
Max nTPM: 474.6
Min nTPM: 425.6
RHH5309_R3676
425.6
RHH5217_R3589
474.6
RHH5246_R3618
446.7
RHH5275_R3647
428.9
Plasmablast nTPM: 2017.7
Samples: 4
Max nTPM: 2169.8
Min nTPM: 1916.8
RHH5312_R3679
2004.6
RHH5220_R3592
2169.8
RHH5249_R3621
1979.4
RHH5278_R3650
1916.8
Switched memory B-cell nTPM: 559.0
Samples: 4
Max nTPM: 605.6
Min nTPM: 512.3
RHH5311_R3678
605.6
RHH5219_R3591
538.4
RHH5248_R3620
579.5
RHH5277_R3649
512.3
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
