MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:30.6 nTPM
HPA Brain:116.5 nTPM
GTEx:30.6 nTPM
FANTOM5:184.0 Scaled Tags Per Million
Pig:84.0 nTPM
Mouse:118.6 nTPM
Allen mouse:6.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 116.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 105.3
2666 Male, age 74, left hemisphere 124.1
2019 Male, age 18, unknown 116.7
1827 Male, age 72, unknown 111.3
2828 Female, age 72, unknown 102.8
1870 Female, age 42, unknown 102.7
2411 Female, age 72, unknown 101.5
1833 Male, age 53, unknown 100.6
1830 Male, age 51, unknown 100.2
2586 Male, age 75, left hemisphere 96.6
2219 Male, age 76, both hemispheres 96.5
Dorsal raphe nucleus
nTPM: 93.1
2750 Male, age 76, both hemispheres 106.9
2298 Female, age 72, unknown 97.2
1828 Male, age 53, unknown 95.4
2016 Female, age 72, unknown 84.7
2047 Male, age 72, unknown 81.2
Inferior colliculus
nTPM: 93.7
2097 Female, age 72, unknown 102.9
2849 Male, age 72, unknown 93.7
1890 Male, age 53, unknown 91.9
1848 Female, age 42, unknown 86.3
Median raphe nucleus
nTPM: 110.4
2220 Male, age 76, midline 110.4
Periaquaductal grey, anterior
nTPM: 108.4
1947 Male, age 18, unknown 112.6
1795 Male, age 51, unknown 107.2
2502 Female, age 75, unknown 105.4
Periaquaductal grey, dorsal
nTPM: 95.1
1831 Male, age 72, unknown 100.8
2850 Male, age 76, both hemispheres 100.6
1840 Male, age 53, unknown 91.3
2464 Female, age 72, unknown 87.9
Periaquaductal grey, lateral
nTPM: 103.3
2272 Male, age 74, both hemispheres 110.9
2140 Male, age 76, both hemispheres 102.9
2053 Male, age 18, unknown 96.2
Pretectal area
nTPM: 116.5
1817 Female, age 42, unknown 141.0
1816 Male, age 51, unknown 140.8
2007 Male, age 72, unknown 132.0
1815 Male, age 53, unknown 131.5
1944 Female, age 72, unknown 123.0
2407 Male, age 75, both hemispheres 110.7
2273 Male, age 74, both hemispheres 105.8
2224 Female, age 72, unknown 100.5
2825 Male, age 18, unknown 99.8
2316 Male, age 76, right hemisphere 98.4
2667 Female, age 75, unknown 97.8
Red nucleus
nTPM: 108.8
2785 Male, age 18, unknown 125.1
2725 Female, age 75, unknown 124.8
2584 Male, age 75, left hemisphere 114.4
2588 Male, age 74, left hemisphere 110.5
2503 Female, age 72, unknown 108.8
1904 Male, age 53, unknown 107.7
1865 Male, age 51, unknown 107.5
1821 Female, age 72, unknown 106.7
2227 Male, age 72, unknown 101.9
2823 Male, age 76, right hemisphere 101.8
1954 Female, age 42, unknown 99.6
2769 Male, age 72, unknown 97.2
Substantia nigra
nTPM: 103.2
2590 Female, age 75, unknown 114.0
1889 Female, age 72, unknown 111.1
2665 Male, age 74, both hemispheres 111.0
2241 Male, age 72, unknown 110.1
2583 Male, age 75, right hemisphere 108.6
2409 Female, age 72, unknown 102.7
1851 Male, age 51, unknown 101.9
1941 Male, age 53, unknown 97.1
1916 Female, age 42, unknown 93.2
2699 Male, age 18, unknown 82.3
Superior colliculus
nTPM: 106.6
2261 Male, age 18, unknown 123.3
2087 Female, age 72, unknown 115.8
1913 Female, age 42, unknown 111.4
2587 Male, age 74, left hemisphere 109.2
1796 Male, age 53, unknown 108.3
1995 Male, age 72, unknown 104.2
2668 Female, age 75, unknown 100.9
2664 Male, age 75, both hemispheres 99.7
1839 Male, age 51, unknown 99.3
1895 Male, age 76, right hemisphere 93.7
Ventral tegmental area
nTPM: 100.7
2223 Female, age 72, unknown 109.3
2218 Male, age 76, both hemispheres 105.7
2410 Female, age 72, unknown 100.9
2021 Male, age 53, unknown 98.9
1942 Male, age 51, unknown 94.9
1915 Female, age 42, unknown 94.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 30.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 30.6
Samples: 139

Max nTPM: 55.1
Min nTPM: 18.6
Std nTPM: 6.9
Median nTPM: 29.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 55.1
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 49.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 49.6
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 48.4
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 47.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 45.8
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 45.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 45.3
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 44.8
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 43.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 43.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 184.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 184.0
FF:10158-103A5 76 years, female 184.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 84.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 80.0
Samples: 4

Max nTPM: 98.0
Min nTPM: 60.9
Sample A Female 98.0
Sample B Female 70.4
Sample C Male 90.8
Sample D Male 60.9
Midbrain
nTPM: 81.2
Samples: 4

Max nTPM: 87.9
Min nTPM: 69.5
Sample A Female 87.9
Sample B Female 69.5
Sample C Male 83.4
Sample D Male 84.1
Periaqueductal gray
nTPM: 73.1
Samples: 3

Max nTPM: 82.2
Min nTPM: 67.5
Sample B Female 69.7
Sample C Male 82.2
Sample D Male 67.5
Superior colliculi
nTPM: 84.1
Samples: 4

Max nTPM: 93.0
Min nTPM: 76.5
Sample A Female 93.0
Sample B Female 87.8
Sample C Male 76.5
Sample D Male 78.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 118.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 118.6
Samples: 4

Max nTPM: 127.8
Min nTPM: 104.8
Sample A Male 104.8
Sample B Male 120.9
Sample C Female 127.8
Sample D Female 120.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.5
69980340 Antisense, RP_050512_04_D02, Mouse strain C57BL/6J (56 days, male) 11.7
69549673 Antisense, RP_050317_04_E09, Mouse strain C57BL/6J (56 days, male) 7.3
71211332 Antisense, RP_050816_01_C04, Mouse strain C57BL/6J (56 days, male) 0.5

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