MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:605.4 nTPM
HPA Brain:761.5 nTPM
GTEx:605.4 nTPM
FANTOM5:1018.7 Scaled Tags Per Million
Pig:1247.3 nTPM
Mouse:2601.7 nTPM
Allen mouse:21.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 761.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 334.7
1830 Male, age 51, unknown 483.3
2586 Male, age 75, left hemisphere 479.2
1833 Male, age 53, unknown 391.8
2411 Female, age 72, unknown 384.2
2019 Male, age 18, unknown 331.4
2219 Male, age 76, both hemispheres 320.8
2828 Female, age 72, unknown 265.9
2666 Male, age 74, left hemisphere 253.9
1870 Female, age 42, unknown 235.2
1827 Male, age 72, unknown 201.7
Dorsal raphe nucleus
nTPM: 761.5
2047 Male, age 72, unknown 1130.3
2016 Female, age 72, unknown 787.4
1828 Male, age 53, unknown 765.4
2298 Female, age 72, unknown 660.6
2750 Male, age 76, both hemispheres 464.1
Inferior colliculus
nTPM: 508.6
1890 Male, age 53, unknown 696.8
2097 Female, age 72, unknown 666.9
2849 Male, age 72, unknown 387.1
1848 Female, age 42, unknown 283.5
Median raphe nucleus
nTPM: 683.5
2220 Male, age 76, midline 683.5
Periaquaductal grey, anterior
nTPM: 361.9
1947 Male, age 18, unknown 585.8
2502 Female, age 75, unknown 320.3
1795 Male, age 51, unknown 179.6
Periaquaductal grey, dorsal
nTPM: 448.0
2850 Male, age 76, both hemispheres 644.6
1840 Male, age 53, unknown 472.6
2464 Female, age 72, unknown 428.8
1831 Male, age 72, unknown 245.8
Periaquaductal grey, lateral
nTPM: 315.7
2140 Male, age 76, both hemispheres 460.2
2272 Male, age 74, both hemispheres 280.5
2053 Male, age 18, unknown 206.3
Pretectal area
nTPM: 220.4
2273 Male, age 74, both hemispheres 438.0
2407 Male, age 75, both hemispheres 351.2
2825 Male, age 18, unknown 311.5
2224 Female, age 72, unknown 311.2
2316 Male, age 76, right hemisphere 219.1
2667 Female, age 75, unknown 181.8
1817 Female, age 42, unknown 146.9
1944 Female, age 72, unknown 139.6
2007 Male, age 72, unknown 121.5
1816 Male, age 51, unknown 113.8
1815 Male, age 53, unknown 89.8
Red nucleus
nTPM: 502.2
1821 Female, age 72, unknown 749.7
1865 Male, age 51, unknown 685.7
1954 Female, age 42, unknown 667.1
2725 Female, age 75, unknown 587.7
2769 Male, age 72, unknown 569.3
2227 Male, age 72, unknown 565.1
2503 Female, age 72, unknown 465.3
1904 Male, age 53, unknown 426.7
2823 Male, age 76, right hemisphere 412.9
2588 Male, age 74, left hemisphere 352.5
2584 Male, age 75, left hemisphere 338.7
2785 Male, age 18, unknown 205.5
Substantia nigra
nTPM: 692.0
2699 Male, age 18, unknown 1241.7
1916 Female, age 42, unknown 900.7
2241 Male, age 72, unknown 792.4
1851 Male, age 51, unknown 737.8
1941 Male, age 53, unknown 688.8
2590 Female, age 75, unknown 667.7
2665 Male, age 74, both hemispheres 588.1
2409 Female, age 72, unknown 508.2
2583 Male, age 75, right hemisphere 455.7
1889 Female, age 72, unknown 339.4
Superior colliculus
nTPM: 257.0
1995 Male, age 72, unknown 480.3
1913 Female, age 42, unknown 358.1
2587 Male, age 74, left hemisphere 314.5
1796 Male, age 53, unknown 274.3
2664 Male, age 75, both hemispheres 265.3
1839 Male, age 51, unknown 211.5
2668 Female, age 75, unknown 203.8
1895 Male, age 76, right hemisphere 169.8
2087 Female, age 72, unknown 151.8
2261 Male, age 18, unknown 140.2
Ventral tegmental area
nTPM: 655.1
1942 Male, age 51, unknown 896.5
2223 Female, age 72, unknown 800.8
1915 Female, age 42, unknown 684.5
2021 Male, age 53, unknown 603.6
2218 Male, age 76, both hemispheres 522.8
2410 Female, age 72, unknown 422.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 605.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 605.4
Samples: 139

Max nTPM: 2408.5
Min nTPM: 154.5
Std nTPM: 401.5
Median nTPM: 483.3
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 2408.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 2163.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 2119.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 1733.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1718.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1508.0
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 1497.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 1415.2
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 1330.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1257.0
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 1246.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1018.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1018.7
FF:10158-103A5 76 years, female 1018.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 1247.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 1122.4
Samples: 4

Max nTPM: 1199.0
Min nTPM: 1063.5
Sample A Female 1163.2
Sample B Female 1199.0
Sample C Male 1063.5
Sample D Male 1064.0
Midbrain
nTPM: 1124.6
Samples: 4

Max nTPM: 1324.8
Min nTPM: 1035.5
Sample A Female 1073.2
Sample B Female 1324.8
Sample C Male 1065.0
Sample D Male 1035.5
Periaqueductal gray
nTPM: 1247.3
Samples: 3

Max nTPM: 1484.0
Min nTPM: 1034.9
Sample B Female 1484.0
Sample C Male 1223.0
Sample D Male 1034.9
Superior colliculi
nTPM: 984.8
Samples: 4

Max nTPM: 1136.0
Min nTPM: 558.3
Sample A Female 1135.1
Sample B Female 558.3
Sample C Male 1109.8
Sample D Male 1136.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 2601.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 2601.8
Samples: 4

Max nTPM: 2678.0
Min nTPM: 2560.3
Sample A Male 2560.3
Sample B Male 2572.5
Sample C Female 2678.0
Sample D Female 2596.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 21.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 21.6
70429447 Antisense, RP_050614_01_F10, Mouse strain C57BL/6J (56 days, male) 21.6
74750016 Antisense, RP_060220_05_E06, Mouse strain C57BL/6J (56 days, male) 21.5

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