MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.4 nTPM
HPA Brain:49.4 nTPM
GTEx:20.4 nTPM
FANTOM5:101.2 Scaled Tags Per Million
Pig:27.9 nTPM
Mouse:13.2 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 49.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.5
2411 Female, age 72, unknown 58.8
1830 Male, age 51, unknown 47.1
2019 Male, age 18, unknown 44.7
1833 Male, age 53, unknown 42.2
1870 Female, age 42, unknown 40.9
2666 Male, age 74, left hemisphere 38.0
2828 Female, age 72, unknown 36.9
1827 Male, age 72, unknown 34.2
2219 Male, age 76, both hemispheres 29.4
2586 Male, age 75, left hemisphere 23.0
Dorsal raphe nucleus
nTPM: 28.1
2750 Male, age 76, both hemispheres 56.1
2016 Female, age 72, unknown 26.9
1828 Male, age 53, unknown 24.7
2298 Female, age 72, unknown 16.9
2047 Male, age 72, unknown 15.7
Inferior colliculus
nTPM: 23.9
1890 Male, age 53, unknown 29.4
2097 Female, age 72, unknown 25.5
1848 Female, age 42, unknown 22.5
2849 Male, age 72, unknown 18.3
Median raphe nucleus
nTPM: 22.0
2220 Male, age 76, midline 22.0
Periaquaductal grey, anterior
nTPM: 22.9
2502 Female, age 75, unknown 28.3
1947 Male, age 18, unknown 21.4
1795 Male, age 51, unknown 19.0
Periaquaductal grey, dorsal
nTPM: 19.0
2464 Female, age 72, unknown 28.0
1831 Male, age 72, unknown 24.8
2850 Male, age 76, both hemispheres 13.4
1840 Male, age 53, unknown 9.6
Periaquaductal grey, lateral
nTPM: 21.4
2053 Male, age 18, unknown 28.0
2272 Male, age 74, both hemispheres 24.1
2140 Male, age 76, both hemispheres 12.1
Pretectal area
nTPM: 28.4
1815 Male, age 53, unknown 51.8
2007 Male, age 72, unknown 42.9
2316 Male, age 76, right hemisphere 31.2
1817 Female, age 42, unknown 31.1
1816 Male, age 51, unknown 26.6
2825 Male, age 18, unknown 24.8
2407 Male, age 75, both hemispheres 24.5
2273 Male, age 74, both hemispheres 24.1
1944 Female, age 72, unknown 22.9
2224 Female, age 72, unknown 17.1
2667 Female, age 75, unknown 15.7
Red nucleus
nTPM: 49.4
1821 Female, age 72, unknown 64.4
1865 Male, age 51, unknown 61.8
2823 Male, age 76, right hemisphere 58.9
2503 Female, age 72, unknown 56.0
1904 Male, age 53, unknown 51.7
2588 Male, age 74, left hemisphere 50.6
2785 Male, age 18, unknown 49.4
2769 Male, age 72, unknown 45.6
2227 Male, age 72, unknown 43.1
1954 Female, age 42, unknown 41.9
2725 Female, age 75, unknown 38.7
2584 Male, age 75, left hemisphere 31.0
Substantia nigra
nTPM: 30.4
1889 Female, age 72, unknown 42.8
2409 Female, age 72, unknown 42.4
2590 Female, age 75, unknown 35.1
2583 Male, age 75, right hemisphere 33.7
1851 Male, age 51, unknown 32.6
1941 Male, age 53, unknown 27.3
2241 Male, age 72, unknown 25.9
2699 Male, age 18, unknown 22.9
2665 Male, age 74, both hemispheres 22.0
1916 Female, age 42, unknown 19.4
Superior colliculus
nTPM: 36.4
1913 Female, age 42, unknown 54.6
2668 Female, age 75, unknown 48.7
1995 Male, age 72, unknown 47.1
2587 Male, age 74, left hemisphere 42.7
1895 Male, age 76, right hemisphere 41.6
1796 Male, age 53, unknown 30.7
2261 Male, age 18, unknown 30.7
1839 Male, age 51, unknown 28.7
2087 Female, age 72, unknown 23.2
2664 Male, age 75, both hemispheres 15.9
Ventral tegmental area
nTPM: 35.5
2410 Female, age 72, unknown 53.5
2223 Female, age 72, unknown 51.7
2218 Male, age 76, both hemispheres 30.3
1942 Male, age 51, unknown 27.8
2021 Male, age 53, unknown 25.8
1915 Female, age 42, unknown 24.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 20.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.4
Samples: 139

Max nTPM: 53.7
Min nTPM: 3.8
Std nTPM: 10.2
Median nTPM: 18.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 53.7
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 51.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 49.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 47.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 46.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 43.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 42.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 40.0
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 38.7
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 38.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 38.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 101.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 101.2
FF:10158-103A5 76 years, female 101.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 27.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 19.0
Samples: 4

Max nTPM: 31.3
Min nTPM: 11.5
Sample A Female 17.7
Sample B Female 11.5
Sample C Male 15.6
Sample D Male 31.3
Midbrain
nTPM: 28.0
Samples: 4

Max nTPM: 71.2
Min nTPM: 13.1
Sample A Female 71.2
Sample B Female 13.7
Sample C Male 13.1
Sample D Male 13.8
Periaqueductal gray
nTPM: 13.1
Samples: 3

Max nTPM: 17.7
Min nTPM: 8.4
Sample B Female 13.1
Sample C Male 8.4
Sample D Male 17.7
Superior colliculi
nTPM: 15.7
Samples: 4

Max nTPM: 19.7
Min nTPM: 11.3
Sample A Female 14.0
Sample B Female 11.3
Sample C Male 17.9
Sample D Male 19.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.2
Samples: 4

Max nTPM: 14.6
Min nTPM: 11.9
Sample A Male 14.6
Sample B Male 13.3
Sample C Female 12.9
Sample D Female 11.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
77620467 Antisense, RP_070129_03_D11, Mouse strain C57BL/6J (56 days, male) 0.3

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