MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.6 nTPM
HPA Brain:26.6 nTPM
GTEx:21.6 nTPM
FANTOM5:50.3 Scaled Tags Per Million
Pig:43.8 nTPM
Mouse:51.1 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 26.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.0
2019 Male, age 18, unknown 29.2
2411 Female, age 72, unknown 27.1
1870 Female, age 42, unknown 24.6
1830 Male, age 51, unknown 23.4
2666 Male, age 74, left hemisphere 22.9
2219 Male, age 76, both hemispheres 22.2
1827 Male, age 72, unknown 21.7
1833 Male, age 53, unknown 21.5
2828 Female, age 72, unknown 19.2
2586 Male, age 75, left hemisphere 17.7
Dorsal raphe nucleus
nTPM: 25.8
2298 Female, age 72, unknown 26.9
1828 Male, age 53, unknown 26.3
2047 Male, age 72, unknown 26.3
2750 Male, age 76, both hemispheres 25.3
2016 Female, age 72, unknown 24.1
Inferior colliculus
nTPM: 23.8
1890 Male, age 53, unknown 24.4
2097 Female, age 72, unknown 24.3
1848 Female, age 42, unknown 23.9
2849 Male, age 72, unknown 22.8
Median raphe nucleus
nTPM: 26.6
2220 Male, age 76, midline 26.6
Periaquaductal grey, anterior
nTPM: 21.7
2502 Female, age 75, unknown 22.9
1947 Male, age 18, unknown 22.4
1795 Male, age 51, unknown 19.8
Periaquaductal grey, dorsal
nTPM: 24.6
2850 Male, age 76, both hemispheres 27.3
1831 Male, age 72, unknown 25.2
1840 Male, age 53, unknown 24.2
2464 Female, age 72, unknown 21.7
Periaquaductal grey, lateral
nTPM: 22.9
2140 Male, age 76, both hemispheres 23.8
2272 Male, age 74, both hemispheres 23.1
2053 Male, age 18, unknown 22.0
Pretectal area
nTPM: 24.3
1817 Female, age 42, unknown 27.8
1944 Female, age 72, unknown 27.5
1815 Male, age 53, unknown 26.4
2007 Male, age 72, unknown 26.3
2273 Male, age 74, both hemispheres 25.2
1816 Male, age 51, unknown 24.3
2224 Female, age 72, unknown 23.4
2316 Male, age 76, right hemisphere 22.8
2825 Male, age 18, unknown 22.5
2667 Female, age 75, unknown 21.1
2407 Male, age 75, both hemispheres 20.1
Red nucleus
nTPM: 24.5
1821 Female, age 72, unknown 29.2
2725 Female, age 75, unknown 27.6
1865 Male, age 51, unknown 27.2
2588 Male, age 74, left hemisphere 25.6
2823 Male, age 76, right hemisphere 24.4
1954 Female, age 42, unknown 24.1
1904 Male, age 53, unknown 23.8
2785 Male, age 18, unknown 23.5
2769 Male, age 72, unknown 23.4
2503 Female, age 72, unknown 23.1
2584 Male, age 75, left hemisphere 22.1
2227 Male, age 72, unknown 20.2
Substantia nigra
nTPM: 25.8
2409 Female, age 72, unknown 32.3
1889 Female, age 72, unknown 30.8
2241 Male, age 72, unknown 28.5
1916 Female, age 42, unknown 27.9
1851 Male, age 51, unknown 26.8
1941 Male, age 53, unknown 25.1
2699 Male, age 18, unknown 24.4
2590 Female, age 75, unknown 21.6
2665 Male, age 74, both hemispheres 21.5
2583 Male, age 75, right hemisphere 19.5
Superior colliculus
nTPM: 24.2
1895 Male, age 76, right hemisphere 27.9
2668 Female, age 75, unknown 27.4
2587 Male, age 74, left hemisphere 26.4
1995 Male, age 72, unknown 26.0
1913 Female, age 42, unknown 24.9
1839 Male, age 51, unknown 23.4
1796 Male, age 53, unknown 22.8
2261 Male, age 18, unknown 22.2
2087 Female, age 72, unknown 22.0
2664 Male, age 75, both hemispheres 19.4
Ventral tegmental area
nTPM: 25.6
2410 Female, age 72, unknown 27.1
2223 Female, age 72, unknown 26.7
2021 Male, age 53, unknown 26.3
2218 Male, age 76, both hemispheres 25.9
1915 Female, age 42, unknown 23.9
1942 Male, age 51, unknown 23.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 21.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 21.6
Samples: 139

Max nTPM: 32.4
Min nTPM: 13.3
Std nTPM: 3.4
Median nTPM: 21.2
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 32.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 32.1
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 30.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 30.6
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 29.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 28.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 27.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 27.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 27.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 27.2
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 27.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 50.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 50.3
FF:10158-103A5 76 years, female 50.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 43.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 41.0
Samples: 4

Max nTPM: 53.0
Min nTPM: 34.6
Sample A Female 53.0
Sample B Female 39.2
Sample C Male 34.6
Sample D Male 37.3
Midbrain
nTPM: 43.8
Samples: 4

Max nTPM: 50.9
Min nTPM: 38.7
Sample A Female 50.9
Sample B Female 44.4
Sample C Male 38.7
Sample D Male 41.3
Periaqueductal gray
nTPM: 37.4
Samples: 3

Max nTPM: 41.4
Min nTPM: 33.7
Sample B Female 37.1
Sample C Male 33.7
Sample D Male 41.4
Superior colliculi
nTPM: 42.9
Samples: 4

Max nTPM: 51.6
Min nTPM: 36.5
Sample A Female 51.6
Sample B Female 39.4
Sample C Male 36.5
Sample D Male 44.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 51.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 51.1
Samples: 4

Max nTPM: 53.4
Min nTPM: 49.9
Sample A Male 50.8
Sample B Male 50.2
Sample C Female 53.4
Sample D Female 49.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71723936 Antisense, RP_050921_01_B11, Mouse strain C57BL/6J (56 days, male) 0.0
74300705 Antisense, RP_051219_03_F05, Mouse strain C57BL/6J (56 days, male) 0.0

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