MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:38.9 nTPM
HPA Brain:98.4 nTPM
GTEx:38.9 nTPM
FANTOM5:189.7 Scaled Tags Per Million
Pig:16.2 nTPM
Mouse:20.5 nTPM
Allen mouse:1.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 98.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 80.7
2411 Female, age 72, unknown 111.8
1870 Female, age 42, unknown 104.9
1830 Male, age 51, unknown 102.5
1833 Male, age 53, unknown 80.9
2019 Male, age 18, unknown 80.6
2828 Female, age 72, unknown 79.1
1827 Male, age 72, unknown 72.9
2666 Male, age 74, left hemisphere 64.4
2219 Male, age 76, both hemispheres 58.5
2586 Male, age 75, left hemisphere 51.6
Dorsal raphe nucleus
nTPM: 64.6
2750 Male, age 76, both hemispheres 119.9
2016 Female, age 72, unknown 58.3
1828 Male, age 53, unknown 56.2
2047 Male, age 72, unknown 52.9
2298 Female, age 72, unknown 35.5
Inferior colliculus
nTPM: 52.7
1890 Male, age 53, unknown 59.4
1848 Female, age 42, unknown 58.5
2849 Male, age 72, unknown 50.6
2097 Female, age 72, unknown 42.5
Median raphe nucleus
nTPM: 63.9
2220 Male, age 76, midline 63.9
Periaquaductal grey, anterior
nTPM: 73.4
1947 Male, age 18, unknown 93.9
2502 Female, age 75, unknown 68.5
1795 Male, age 51, unknown 57.7
Periaquaductal grey, dorsal
nTPM: 43.0
2464 Female, age 72, unknown 61.4
1831 Male, age 72, unknown 53.2
1840 Male, age 53, unknown 28.9
2850 Male, age 76, both hemispheres 28.4
Periaquaductal grey, lateral
nTPM: 49.5
2053 Male, age 18, unknown 63.7
2272 Male, age 74, both hemispheres 55.6
2140 Male, age 76, both hemispheres 29.3
Pretectal area
nTPM: 57.8
2407 Male, age 75, both hemispheres 78.4
2316 Male, age 76, right hemisphere 74.5
2825 Male, age 18, unknown 68.1
1815 Male, age 53, unknown 67.4
2007 Male, age 72, unknown 61.5
1817 Female, age 42, unknown 56.9
2273 Male, age 74, both hemispheres 55.6
2224 Female, age 72, unknown 51.4
1816 Male, age 51, unknown 46.9
2667 Female, age 75, unknown 37.4
1944 Female, age 72, unknown 37.2
Red nucleus
nTPM: 98.4
1865 Male, age 51, unknown 129.6
1821 Female, age 72, unknown 120.1
1904 Male, age 53, unknown 108.6
2503 Female, age 72, unknown 106.7
2823 Male, age 76, right hemisphere 101.5
2769 Male, age 72, unknown 95.5
2588 Male, age 74, left hemisphere 93.3
2227 Male, age 72, unknown 93.2
1954 Female, age 42, unknown 87.4
2584 Male, age 75, left hemisphere 86.7
2725 Female, age 75, unknown 79.2
2785 Male, age 18, unknown 79.1
Substantia nigra
nTPM: 65.6
2590 Female, age 75, unknown 94.5
2409 Female, age 72, unknown 89.3
2583 Male, age 75, right hemisphere 85.3
1941 Male, age 53, unknown 71.8
1889 Female, age 72, unknown 70.8
1851 Male, age 51, unknown 67.8
2241 Male, age 72, unknown 49.9
1916 Female, age 42, unknown 43.9
2665 Male, age 74, both hemispheres 43.9
2699 Male, age 18, unknown 38.3
Superior colliculus
nTPM: 72.1
1913 Female, age 42, unknown 120.0
2587 Male, age 74, left hemisphere 89.0
2668 Female, age 75, unknown 88.0
1995 Male, age 72, unknown 79.9
1839 Male, age 51, unknown 67.6
1895 Male, age 76, right hemisphere 65.9
1796 Male, age 53, unknown 65.2
2261 Male, age 18, unknown 62.6
2087 Female, age 72, unknown 42.5
2664 Male, age 75, both hemispheres 40.5
Ventral tegmental area
nTPM: 77.4
2223 Female, age 72, unknown 120.3
2410 Female, age 72, unknown 99.7
2218 Male, age 76, both hemispheres 67.0
2021 Male, age 53, unknown 64.0
1942 Male, age 51, unknown 59.4
1915 Female, age 42, unknown 53.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 38.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 38.9
Samples: 139

Max nTPM: 135.9
Min nTPM: 8.9
Std nTPM: 19.6
Median nTPM: 34.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 135.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 95.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 86.1
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 84.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 82.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 81.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 80.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 79.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 73.5
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 67.4
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 66.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 189.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 189.7
FF:10158-103A5 76 years, female 189.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 16.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 16.1
Samples: 4

Max nTPM: 25.7
Min nTPM: 3.9
Sample A Female 22.9
Sample B Female 12.0
Sample C Male 25.7
Sample D Male 3.9
Midbrain
nTPM: 9.9
Samples: 4

Max nTPM: 17.8
Min nTPM: 4.4
Sample A Female 4.4
Sample B Female 10.0
Sample C Male 17.8
Sample D Male 7.5
Periaqueductal gray
nTPM: 7.5
Samples: 3

Max nTPM: 8.7
Min nTPM: 6.5
Sample B Female 7.2
Sample C Male 8.7
Sample D Male 6.5
Superior colliculi
nTPM: 13.4
Samples: 4

Max nTPM: 18.8
Min nTPM: 6.9
Sample A Female 11.2
Sample B Female 6.9
Sample C Male 16.7
Sample D Male 18.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 20.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 20.5
Samples: 4

Max nTPM: 21.5
Min nTPM: 18.4
Sample A Male 18.4
Sample B Male 21.5
Sample C Female 21.3
Sample D Female 20.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
70928361 Antisense, RP_050725_02_D08, Mouse strain C57BL/6J (56 days, male) 1.7
68196926 Antisense, RP_041116_01_F04, Mouse strain C57BL/6J (56 days, male) 1.1

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