MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:40.2 nTPM
HPA Brain:42.3 nTPM
GTEx:40.2 nTPM
FANTOM5:53.4 Scaled Tags Per Million
Pig:20.9 nTPM
Mouse:62.1 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 42.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 38.6
1833 Male, age 53, unknown 47.4
1830 Male, age 51, unknown 43.0
2586 Male, age 75, left hemisphere 42.9
1870 Female, age 42, unknown 40.3
2019 Male, age 18, unknown 40.1
2828 Female, age 72, unknown 38.8
2411 Female, age 72, unknown 38.4
2666 Male, age 74, left hemisphere 37.7
1827 Male, age 72, unknown 29.9
2219 Male, age 76, both hemispheres 27.4
Dorsal raphe nucleus
nTPM: 38.5
2750 Male, age 76, both hemispheres 47.6
2016 Female, age 72, unknown 42.8
2298 Female, age 72, unknown 34.7
2047 Male, age 72, unknown 34.6
1828 Male, age 53, unknown 32.7
Inferior colliculus
nTPM: 32.9
2849 Male, age 72, unknown 37.2
1890 Male, age 53, unknown 33.4
1848 Female, age 42, unknown 30.6
2097 Female, age 72, unknown 30.2
Median raphe nucleus
nTPM: 38.3
2220 Male, age 76, midline 38.3
Periaquaductal grey, anterior
nTPM: 34.1
2502 Female, age 75, unknown 38.2
1795 Male, age 51, unknown 32.5
1947 Male, age 18, unknown 31.6
Periaquaductal grey, dorsal
nTPM: 32.0
2464 Female, age 72, unknown 36.1
1831 Male, age 72, unknown 31.5
2850 Male, age 76, both hemispheres 30.2
1840 Male, age 53, unknown 30.0
Periaquaductal grey, lateral
nTPM: 30.1
2053 Male, age 18, unknown 33.4
2272 Male, age 74, both hemispheres 31.1
2140 Male, age 76, both hemispheres 25.9
Pretectal area
nTPM: 30.8
2316 Male, age 76, right hemisphere 39.8
2407 Male, age 75, both hemispheres 38.3
2224 Female, age 72, unknown 36.8
2825 Male, age 18, unknown 36.5
1815 Male, age 53, unknown 32.6
2667 Female, age 75, unknown 31.5
1817 Female, age 42, unknown 29.2
2273 Male, age 74, both hemispheres 28.3
2007 Male, age 72, unknown 25.6
1944 Female, age 72, unknown 22.8
1816 Male, age 51, unknown 17.7
Red nucleus
nTPM: 42.3
1904 Male, age 53, unknown 52.4
2823 Male, age 76, right hemisphere 47.2
2227 Male, age 72, unknown 46.3
1821 Female, age 72, unknown 44.7
2769 Male, age 72, unknown 44.4
1865 Male, age 51, unknown 44.1
2785 Male, age 18, unknown 43.7
1954 Female, age 42, unknown 40.2
2584 Male, age 75, left hemisphere 38.8
2588 Male, age 74, left hemisphere 38.0
2503 Female, age 72, unknown 34.1
2725 Female, age 75, unknown 33.3
Substantia nigra
nTPM: 31.1
1851 Male, age 51, unknown 38.2
2583 Male, age 75, right hemisphere 35.1
2699 Male, age 18, unknown 34.9
2665 Male, age 74, both hemispheres 33.4
2409 Female, age 72, unknown 33.3
1889 Female, age 72, unknown 30.3
2590 Female, age 75, unknown 30.1
2241 Male, age 72, unknown 26.9
1916 Female, age 42, unknown 25.5
1941 Male, age 53, unknown 23.7
Superior colliculus
nTPM: 36.6
1995 Male, age 72, unknown 50.9
1913 Female, age 42, unknown 50.3
2664 Male, age 75, both hemispheres 41.8
2668 Female, age 75, unknown 38.9
1839 Male, age 51, unknown 35.7
2587 Male, age 74, left hemisphere 35.3
1895 Male, age 76, right hemisphere 34.0
1796 Male, age 53, unknown 31.1
2087 Female, age 72, unknown 24.9
2261 Male, age 18, unknown 22.7
Ventral tegmental area
nTPM: 36.9
2223 Female, age 72, unknown 44.8
1942 Male, age 51, unknown 43.4
2021 Male, age 53, unknown 38.7
2410 Female, age 72, unknown 33.9
1915 Female, age 42, unknown 32.7
2218 Male, age 76, both hemispheres 27.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 40.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 40.2
Samples: 139

Max nTPM: 92.7
Min nTPM: 13.2
Std nTPM: 14.7
Median nTPM: 35.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 92.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 80.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 77.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 75.5
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 74.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 72.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 70.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 69.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 66.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 66.5
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 64.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 53.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 53.4
FF:10158-103A5 76 years, female 53.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 20.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 20.9
Samples: 4

Max nTPM: 23.9
Min nTPM: 17.8
Sample A Female 23.5
Sample B Female 18.5
Sample C Male 17.8
Sample D Male 23.9
Midbrain
nTPM: 19.3
Samples: 4

Max nTPM: 35.2
Min nTPM: 11.3
Sample A Female 35.2
Sample B Female 18.1
Sample C Male 11.3
Sample D Male 12.7
Periaqueductal gray
nTPM: 16.2
Samples: 3

Max nTPM: 17.7
Min nTPM: 15.2
Sample B Female 17.7
Sample C Male 15.2
Sample D Male 15.6
Superior colliculi
nTPM: 16.3
Samples: 4

Max nTPM: 19.7
Min nTPM: 14.9
Sample A Female 19.7
Sample B Female 14.9
Sample C Male 14.9
Sample D Male 15.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 62.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 62.1
Samples: 4

Max nTPM: 65.1
Min nTPM: 55.6
Sample A Male 63.1
Sample B Male 55.6
Sample C Female 65.1
Sample D Female 64.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
68301927 Antisense, RP_041130_02_A12, Mouse strain C57BL/6J (56 days, male) 1.0
73512493 Antisense, RP_051017_02_D04, Mouse strain C57BL/6J (56 days, male) 0.2

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