HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:3.6 nTPM
HPA Brain:7.3 nTPM
GTEx:3.6 nTPM
FANTOM5:21.4 Scaled Tags Per Million
Pig:9.9 nTPM
Mouse:25.7 nTPM
Allen mouse:0.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA035183
Glial cells Not detected
Neuronal cells Low


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 7.3
Sample id Sample description nTPM
Hippocampus
nTPM: 6.8
2529 Female, age 94, left hemisphere 8.0
1898 Male, age 80, left hemisphere 7.3
2621 Female, age 67, right hemisphere 6.7
1855 Male, age 76, left hemisphere 6.6
1911 Female, age 85, right hemisphere 6.5
2148 Female, age 91, left hemisphere 5.8
Dentate gyrus
nTPM: 7.1
2530 Female, age 94, left hemisphere 10.6
2246 Female, age 85, both hemispheres 7.1
1927 Female, age 91, both hemispheres 6.8
2528 Male, age 74, both hemispheres 6.5
2010 Male, age 76, both hemispheres 6.0
2531 Female, age 67, both hemispheres 5.6
Entorhinal gyrus
nTPM: 7.0
1938 Female, age 85, left hemisphere 7.8
2613 Female, age 94, left hemisphere 7.3
2117 Female, age 91, right hemisphere 6.9
2686 Male, age 75, right hemisphere 6.8
1787 Male, age 76, left hemisphere 6.6
2764 Male, age 80, right hemisphere 6.3
Hippocampus, CA1
nTPM: 6.5
1873 Female, age 85, both hemispheres 7.4
2527 Male, age 74, both hemispheres 6.9
2749 Male, age 80, left hemisphere 6.7
2082 Female, age 91, right hemisphere 6.0
2045 Male, age 76, both hemispheres 5.4
Hippocampus, CA2
nTPM: 7.3
2437 Female, age 94, left hemisphere 8.7
1963 Male, age 80, left hemisphere 7.7
1940 Female, age 85, left hemisphere 7.5
1892 Male, age 76, both hemispheres 7.4
2249 Male, age 74, both hemispheres 6.7
2113 Female, age 91, right hemisphere 6.0
Hippocampus, CA3
nTPM: 6.7
2861 Female, age 67, both hemispheres 7.7
1891 Female, age 85, both hemispheres 7.1
1867 Male, age 76, both hemispheres 6.8
2436 Male, age 74, both hemispheres 6.8
2137 Male, age 80, left hemisphere 6.1
2620 Female, age 94, left hemisphere 5.5
Parahippocampal cortex
nTPM: 6.8
1850 Male, age 80, both hemispheres 7.9
1990 Female, age 91, right hemisphere 7.2
1933 Female, age 85, both hemispheres 7.0
2250 Female, age 67, right hemisphere 6.9
2692 Male, age 74, both hemispheres 6.8
2693 Female, age 94, both hemispheres 6.8
2532 Female, age 72, left hemisphere 6.6
2245 Female, age 91, both hemispheres 6.5
2018 Male, age 76, both hemispheres 6.3
2622 Female, age 67, right hemisphere 5.5
Perirhinal gyrus
nTPM: 7.3
1841 Female, age 85, right hemisphere 7.9
1847 Female, age 91, left hemisphere 7.8
1794 Male, age 80, right hemisphere 7.5
2848 Male, age 76, right hemisphere 7.0
2521 Female, age 94, right hemisphere 6.2
Subiculum
nTPM: 6.7
2438 Female, age 94, left hemisphere 8.5
2042 Male, age 76, both hemispheres 6.5
1901 Male, age 80, both hemispheres 6.4
1977 Female, age 85, both hemispheres 6.4
2619 Male, age 74, both hemispheres 6.2
2729 Female, age 91, right hemisphere 6.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 3.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 3.6
Samples: 197

Max nTPM: 6.5
Min nTPM: 1.6
Std nTPM: 0.8
Median nTPM: 3.5
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 6.5
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 6.5
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 6.3
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 6.0
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 6.0
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 5.8
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 5.8
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 5.7
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 5.6
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 5.6
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 5.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 21.4
FF:10153-102I9 76 years, female 24.1
FF:10169-103B7 60 years, female 18.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 9.9
Pig sample Sample description nTPM
Subiculum
nTPM: 9.6
Samples: 4

Max nTPM: 10.1
Min nTPM: 8.7
Sample A Female 9.8
Sample B Female 8.7
Sample C Male 9.9
Sample D Male 10.1
Dorsal hippocampus
nTPM: 9.7
Samples: 4

Max nTPM: 11.4
Min nTPM: 8.1
Sample A Female 10.1
Sample B Female 8.1
Sample C Male 11.4
Sample D Male 9.1
Entorhinal cortex
nTPM: 9.9
Samples: 4

Max nTPM: 10.9
Min nTPM: 8.6
Sample A Female 9.5
Sample B Female 8.6
Sample C Male 10.4
Sample D Male 10.9
Ventral hippocampus
nTPM: 9.6
Samples: 4

Max nTPM: 10.0
Min nTPM: 9.1
Sample A Female 10.0
Sample B Female 9.1
Sample C Male 9.7
Sample D Male 9.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 25.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 25.0
Samples: 4

Max nTPM: 28.0
Min nTPM: 22.4
Sample A Male 22.4
Sample B Male 24.7
Sample C Female 24.8
Sample D Female 28.0
Hippocampal formation
nTPM: 25.7
Samples: 4

Max nTPM: 27.9
Min nTPM: 24.1
Sample A Male 27.9
Sample B Male 25.5
Sample C Female 25.4
Sample D Female 24.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.8
73635419 Antisense, RP_051130_02_E08, Mouse strain C57BL/6J (56 days, male) 0.8

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