MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:0.3 nTPM
HPA Brain:6.8 nTPM
GTEx:0.3 nTPM
FANTOM5:0.3 Scaled Tags Per Million
Pig:17.7 nTPM
Mouse:12.1 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 6.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 5.0
2219 Male, age 76, both hemispheres 10.4
1827 Male, age 72, unknown 6.4
2411 Female, age 72, unknown 6.0
2019 Male, age 18, unknown 4.7
1833 Male, age 53, unknown 4.6
2828 Female, age 72, unknown 3.8
1830 Male, age 51, unknown 3.7
1870 Female, age 42, unknown 3.7
2586 Male, age 75, left hemisphere 3.6
2666 Male, age 74, left hemisphere 3.1
Dorsal raphe nucleus
nTPM: 4.5
2298 Female, age 72, unknown 7.6
2047 Male, age 72, unknown 5.3
2750 Male, age 76, both hemispheres 4.6
2016 Female, age 72, unknown 2.6
1828 Male, age 53, unknown 2.4
Inferior colliculus
nTPM: 6.8
1848 Female, age 42, unknown 8.2
2097 Female, age 72, unknown 7.3
2849 Male, age 72, unknown 7.0
1890 Male, age 53, unknown 4.8
Median raphe nucleus
nTPM: 4.4
2220 Male, age 76, midline 4.4
Periaquaductal grey, anterior
nTPM: 5.7
2502 Female, age 75, unknown 6.5
1795 Male, age 51, unknown 6.3
1947 Male, age 18, unknown 4.3
Periaquaductal grey, dorsal
nTPM: 6.8
1840 Male, age 53, unknown 9.1
1831 Male, age 72, unknown 7.1
2850 Male, age 76, both hemispheres 5.5
2464 Female, age 72, unknown 5.3
Periaquaductal grey, lateral
nTPM: 5.3
2053 Male, age 18, unknown 6.7
2140 Male, age 76, both hemispheres 5.4
2272 Male, age 74, both hemispheres 3.7
Pretectal area
nTPM: 6.8
2667 Female, age 75, unknown 8.1
1817 Female, age 42, unknown 8.0
1816 Male, age 51, unknown 7.8
2007 Male, age 72, unknown 7.8
2316 Male, age 76, right hemisphere 7.8
2825 Male, age 18, unknown 7.2
1815 Male, age 53, unknown 6.4
2407 Male, age 75, both hemispheres 6.4
1944 Female, age 72, unknown 6.0
2224 Female, age 72, unknown 6.0
2273 Male, age 74, both hemispheres 3.2
Red nucleus
nTPM: 5.6
1904 Male, age 53, unknown 8.2
1954 Female, age 42, unknown 7.2
1821 Female, age 72, unknown 6.9
2823 Male, age 76, right hemisphere 6.7
1865 Male, age 51, unknown 6.6
2227 Male, age 72, unknown 5.7
2769 Male, age 72, unknown 5.5
2785 Male, age 18, unknown 5.0
2584 Male, age 75, left hemisphere 4.6
2503 Female, age 72, unknown 4.3
2588 Male, age 74, left hemisphere 3.0
2725 Female, age 75, unknown 2.9
Substantia nigra
nTPM: 2.9
1889 Female, age 72, unknown 6.8
2665 Male, age 74, both hemispheres 4.7
1851 Male, age 51, unknown 2.5
1941 Male, age 53, unknown 2.4
2583 Male, age 75, right hemisphere 2.3
2590 Female, age 75, unknown 2.3
2241 Male, age 72, unknown 2.0
2409 Female, age 72, unknown 2.0
1916 Female, age 42, unknown 1.8
2699 Male, age 18, unknown 1.7
Superior colliculus
nTPM: 6.1
1895 Male, age 76, right hemisphere 10.5
2261 Male, age 18, unknown 7.8
2668 Female, age 75, unknown 7.7
1796 Male, age 53, unknown 6.5
1839 Male, age 51, unknown 6.1
2087 Female, age 72, unknown 5.7
2664 Male, age 75, both hemispheres 5.7
2587 Male, age 74, left hemisphere 4.8
1913 Female, age 42, unknown 2.9
1995 Male, age 72, unknown 2.7
Ventral tegmental area
nTPM: 4.5
2223 Female, age 72, unknown 7.4
2021 Male, age 53, unknown 4.6
2410 Female, age 72, unknown 4.3
2218 Male, age 76, both hemispheres 4.1
1915 Female, age 42, unknown 3.2
1942 Male, age 51, unknown 3.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 0.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 0.3
Samples: 139

Max nTPM: 5.5
Min nTPM: 0.0
Std nTPM: 0.6
Median nTPM: 0.1
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 5.5
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 3.6
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 2.7
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 1.4
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 1.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 1.2
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 1.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 1.1
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 1.0
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 0.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 0.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 0.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.3
FF:10158-103A5 76 years, female 0.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 17.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 12.7
Samples: 4

Max nTPM: 18.1
Min nTPM: 6.7
Sample A Female 16.5
Sample B Female 9.4
Sample C Male 18.1
Sample D Male 6.7
Midbrain
nTPM: 17.7
Samples: 4

Max nTPM: 25.1
Min nTPM: 11.1
Sample A Female 13.3
Sample B Female 11.1
Sample C Male 25.1
Sample D Male 21.3
Periaqueductal gray
nTPM: 12.4
Samples: 3

Max nTPM: 19.6
Min nTPM: 8.7
Sample B Female 8.8
Sample C Male 19.6
Sample D Male 8.7
Superior colliculi
nTPM: 14.7
Samples: 4

Max nTPM: 20.7
Min nTPM: 6.5
Sample A Female 12.7
Sample B Female 6.5
Sample C Male 20.7
Sample D Male 18.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 12.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.1
Samples: 4

Max nTPM: 12.9
Min nTPM: 10.7
Sample A Male 10.7
Sample B Male 12.6
Sample C Female 12.1
Sample D Female 12.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
74882784 Antisense, RP_060315_04_G09, Mouse strain C57BL/6J (56 days, male) 0.2
71377856 Antisense, RP_050510_03_F11, Mouse strain C57BL/6J (56 days, male) 0.1

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