MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.4 nTPM
HPA Brain:71.6 nTPM
GTEx:13.4 nTPM
FANTOM5:17.8 Scaled Tags Per Million
Pig:24.0 nTPM
Mouse:30.6 nTPM
Allen mouse:1.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 71.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 61.6
1827 Male, age 72, unknown 85.3
2666 Male, age 74, left hemisphere 84.2
2586 Male, age 75, left hemisphere 78.1
2828 Female, age 72, unknown 76.4
2019 Male, age 18, unknown 73.1
1830 Male, age 51, unknown 46.5
1833 Male, age 53, unknown 43.8
1870 Female, age 42, unknown 43.7
2411 Female, age 72, unknown 42.9
2219 Male, age 76, both hemispheres 42.2
Dorsal raphe nucleus
nTPM: 46.2
2750 Male, age 76, both hemispheres 57.5
1828 Male, age 53, unknown 47.1
2047 Male, age 72, unknown 46.9
2298 Female, age 72, unknown 41.2
2016 Female, age 72, unknown 38.2
Inferior colliculus
nTPM: 44.5
1848 Female, age 42, unknown 47.1
1890 Male, age 53, unknown 46.2
2849 Male, age 72, unknown 42.9
2097 Female, age 72, unknown 42.0
Median raphe nucleus
nTPM: 61.4
2220 Male, age 76, midline 61.4
Periaquaductal grey, anterior
nTPM: 59.3
1795 Male, age 51, unknown 68.5
1947 Male, age 18, unknown 59.3
2502 Female, age 75, unknown 50.1
Periaquaductal grey, dorsal
nTPM: 52.4
2850 Male, age 76, both hemispheres 55.6
1831 Male, age 72, unknown 54.4
2464 Female, age 72, unknown 50.1
1840 Male, age 53, unknown 49.5
Periaquaductal grey, lateral
nTPM: 50.7
2053 Male, age 18, unknown 51.6
2140 Male, age 76, both hemispheres 50.8
2272 Male, age 74, both hemispheres 49.6
Pretectal area
nTPM: 71.6
1816 Male, age 51, unknown 121.2
1944 Female, age 72, unknown 103.8
1817 Female, age 42, unknown 100.0
2007 Male, age 72, unknown 88.7
1815 Male, age 53, unknown 81.6
2407 Male, age 75, both hemispheres 57.4
2667 Female, age 75, unknown 55.8
2316 Male, age 76, right hemisphere 49.7
2273 Male, age 74, both hemispheres 43.8
2825 Male, age 18, unknown 43.4
2224 Female, age 72, unknown 42.7
Red nucleus
nTPM: 53.3
2584 Male, age 75, left hemisphere 71.1
2785 Male, age 18, unknown 66.2
2823 Male, age 76, right hemisphere 62.8
2588 Male, age 74, left hemisphere 60.0
2725 Female, age 75, unknown 55.4
1954 Female, age 42, unknown 51.4
1904 Male, age 53, unknown 50.6
1865 Male, age 51, unknown 48.1
2503 Female, age 72, unknown 47.5
2227 Male, age 72, unknown 44.3
1821 Female, age 72, unknown 42.8
2769 Male, age 72, unknown 39.7
Substantia nigra
nTPM: 53.4
1889 Female, age 72, unknown 76.5
2583 Male, age 75, right hemisphere 62.5
2409 Female, age 72, unknown 57.0
2590 Female, age 75, unknown 55.8
2665 Male, age 74, both hemispheres 55.8
1916 Female, age 42, unknown 49.4
1851 Male, age 51, unknown 46.3
2241 Male, age 72, unknown 45.6
1941 Male, age 53, unknown 43.5
2699 Male, age 18, unknown 41.9
Superior colliculus
nTPM: 65.6
2087 Female, age 72, unknown 85.1
1796 Male, age 53, unknown 81.8
2668 Female, age 75, unknown 80.8
2261 Male, age 18, unknown 77.3
1913 Female, age 42, unknown 63.5
1995 Male, age 72, unknown 58.5
2664 Male, age 75, both hemispheres 58.4
1895 Male, age 76, right hemisphere 52.2
1839 Male, age 51, unknown 49.8
2587 Male, age 74, left hemisphere 48.7
Ventral tegmental area
nTPM: 46.0
2218 Male, age 76, both hemispheres 52.1
2021 Male, age 53, unknown 49.0
2223 Female, age 72, unknown 47.2
2410 Female, age 72, unknown 45.0
1942 Male, age 51, unknown 43.9
1915 Female, age 42, unknown 38.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 13.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.4
Samples: 139

Max nTPM: 24.4
Min nTPM: 6.6
Std nTPM: 3.1
Median nTPM: 12.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 24.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 23.7
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 21.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 20.8
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 20.7
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 20.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 19.4
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 19.3
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 19.3
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 19.0
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 18.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 17.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 17.8
FF:10158-103A5 76 years, female 17.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 24.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 19.0
Samples: 4

Max nTPM: 21.4
Min nTPM: 16.8
Sample A Female 21.4
Sample B Female 17.2
Sample C Male 20.7
Sample D Male 16.8
Midbrain
nTPM: 23.9
Samples: 4

Max nTPM: 36.3
Min nTPM: 15.5
Sample A Female 15.5
Sample B Female 18.8
Sample C Male 36.3
Sample D Male 24.8
Periaqueductal gray
nTPM: 23.2
Samples: 3

Max nTPM: 26.7
Min nTPM: 21.2
Sample B Female 21.6
Sample C Male 26.7
Sample D Male 21.2
Superior colliculi
nTPM: 23.9
Samples: 4

Max nTPM: 29.4
Min nTPM: 18.8
Sample A Female 21.1
Sample B Female 18.8
Sample C Male 26.4
Sample D Male 29.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 30.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 30.6
Samples: 4

Max nTPM: 32.5
Min nTPM: 27.8
Sample A Male 27.8
Sample B Male 31.8
Sample C Female 32.5
Sample D Female 30.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
71307268 Antisense, RP_050825_01_E10, Mouse strain C57BL/6J (56 days, male) 1.5
73512377 Antisense, RP_050825_01_E10, Mouse strain C57BL/6J (56 days, male) 0.2

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