HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.3 nTPM
HPA Brain:38.5 nTPM
GTEx:17.3 nTPM
FANTOM5:20.5 Scaled Tags Per Million
Pig:37.5 nTPM
Mouse:23.9 nTPM
Allen mouse:9.9 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 38.5
Sample id Sample description nTPM
Hippocampus
nTPM: 31.5
1898 Male, age 80, left hemisphere 35.3
2148 Female, age 91, left hemisphere 34.0
2621 Female, age 67, right hemisphere 32.1
1911 Female, age 85, right hemisphere 31.3
1855 Male, age 76, left hemisphere 28.0
2529 Female, age 94, left hemisphere 28.0
Dentate gyrus
nTPM: 31.7
1927 Female, age 91, both hemispheres 41.1
2531 Female, age 67, both hemispheres 34.5
2528 Male, age 74, both hemispheres 30.3
2010 Male, age 76, both hemispheres 28.9
2246 Female, age 85, both hemispheres 28.7
2530 Female, age 94, left hemisphere 26.6
Entorhinal gyrus
nTPM: 32.7
1938 Female, age 85, left hemisphere 38.1
2613 Female, age 94, left hemisphere 37.3
2764 Male, age 80, right hemisphere 35.6
1787 Male, age 76, left hemisphere 32.6
2686 Male, age 75, right hemisphere 26.8
2117 Female, age 91, right hemisphere 25.6
Hippocampus, CA1
nTPM: 34.8
2749 Male, age 80, left hemisphere 42.1
2045 Male, age 76, both hemispheres 40.1
1873 Female, age 85, both hemispheres 32.5
2527 Male, age 74, both hemispheres 30.1
2082 Female, age 91, right hemisphere 29.2
Hippocampus, CA2
nTPM: 33.0
1892 Male, age 76, both hemispheres 37.0
1963 Male, age 80, left hemisphere 36.1
1940 Female, age 85, left hemisphere 35.8
2113 Female, age 91, right hemisphere 30.2
2249 Male, age 74, both hemispheres 29.6
2437 Female, age 94, left hemisphere 29.2
Hippocampus, CA3
nTPM: 35.0
2137 Male, age 80, left hemisphere 45.0
1867 Male, age 76, both hemispheres 36.3
2861 Female, age 67, both hemispheres 35.9
2620 Female, age 94, left hemisphere 34.2
1891 Female, age 85, both hemispheres 31.2
2436 Male, age 74, both hemispheres 27.3
Parahippocampal cortex
nTPM: 32.1
1850 Male, age 80, both hemispheres 39.4
2693 Female, age 94, both hemispheres 34.0
1933 Female, age 85, both hemispheres 33.4
1990 Female, age 91, right hemisphere 32.7
2250 Female, age 67, right hemisphere 32.7
2245 Female, age 91, both hemispheres 31.2
2532 Female, age 72, left hemisphere 31.1
2622 Female, age 67, right hemisphere 29.9
2692 Male, age 74, both hemispheres 28.4
2018 Male, age 76, both hemispheres 28.2
Perirhinal gyrus
nTPM: 38.5
1794 Male, age 80, right hemisphere 41.0
1847 Female, age 91, left hemisphere 40.9
1841 Female, age 85, right hemisphere 38.8
2848 Male, age 76, right hemisphere 36.6
2521 Female, age 94, right hemisphere 35.2
Subiculum
nTPM: 29.0
1977 Female, age 85, both hemispheres 33.6
1901 Male, age 80, both hemispheres 31.7
2729 Female, age 91, right hemisphere 28.8
2438 Female, age 94, left hemisphere 28.5
2619 Male, age 74, both hemispheres 26.2
2042 Male, age 76, both hemispheres 25.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 17.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 17.3
Samples: 197

Max nTPM: 29.5
Min nTPM: 10.6
Std nTPM: 3.8
Median nTPM: 16.7
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 29.5
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 29.0
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 27.8
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 27.5
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 27.5
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 27.4
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 26.3
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 26.1
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 25.9
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 25.7
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 25.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 20.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 20.5
FF:10169-103B7 60 years, female 20.7
FF:10153-102I9 76 years, female 20.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 37.5
Pig sample Sample description nTPM
Subiculum
nTPM: 35.8
Samples: 4

Max nTPM: 42.3
Min nTPM: 32.1
Sample A Female 42.3
Sample B Female 32.1
Sample C Male 34.7
Sample D Male 34.0
Dorsal hippocampus
nTPM: 35.9
Samples: 4

Max nTPM: 37.7
Min nTPM: 34.8
Sample A Female 37.7
Sample B Female 35.8
Sample C Male 35.3
Sample D Male 34.8
Entorhinal cortex
nTPM: 37.5
Samples: 4

Max nTPM: 39.3
Min nTPM: 35.9
Sample A Female 39.3
Sample B Female 37.2
Sample C Male 37.5
Sample D Male 35.9
Ventral hippocampus
nTPM: 35.2
Samples: 4

Max nTPM: 40.0
Min nTPM: 32.7
Sample A Female 32.7
Sample B Female 33.1
Sample C Male 34.9
Sample D Male 40.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 23.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 23.9
Samples: 4

Max nTPM: 27.3
Min nTPM: 19.9
Sample A Male 19.9
Sample B Male 27.3
Sample C Female 23.1
Sample D Female 25.3
Hippocampal formation
nTPM: 22.2
Samples: 4

Max nTPM: 24.8
Min nTPM: 18.7
Sample A Male 24.8
Sample B Male 23.9
Sample C Female 18.7
Sample D Female 21.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 9.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 9.9
69290704 Antisense, RP_050407_04_E10, Mouse strain C57BL/6J (56 days, male) 9.9

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