MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.1 nTPM
HPA Brain:98.3 nTPM
GTEx:24.1 nTPM
FANTOM5:113.4 Scaled Tags Per Million
Pig:88.6 nTPM
Mouse:64.9 nTPM
Allen mouse:2.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 98.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 87.2
2411 Female, age 72, unknown 106.4
2019 Male, age 18, unknown 96.9
1830 Male, age 51, unknown 95.3
1827 Male, age 72, unknown 90.4
1833 Male, age 53, unknown 86.3
1870 Female, age 42, unknown 85.9
2828 Female, age 72, unknown 85.2
2219 Male, age 76, both hemispheres 83.2
2666 Male, age 74, left hemisphere 76.6
2586 Male, age 75, left hemisphere 66.2
Dorsal raphe nucleus
nTPM: 60.0
2750 Male, age 76, both hemispheres 98.1
1828 Male, age 53, unknown 59.1
2016 Female, age 72, unknown 55.6
2298 Female, age 72, unknown 47.0
2047 Male, age 72, unknown 40.2
Inferior colliculus
nTPM: 75.0
2097 Female, age 72, unknown 91.9
1890 Male, age 53, unknown 80.6
1848 Female, age 42, unknown 63.8
2849 Male, age 72, unknown 63.8
Median raphe nucleus
nTPM: 50.1
2220 Male, age 76, midline 50.1
Periaquaductal grey, anterior
nTPM: 77.0
1947 Male, age 18, unknown 90.1
2502 Female, age 75, unknown 73.8
1795 Male, age 51, unknown 67.1
Periaquaductal grey, dorsal
nTPM: 46.1
2464 Female, age 72, unknown 64.0
1831 Male, age 72, unknown 50.5
2850 Male, age 76, both hemispheres 35.9
1840 Male, age 53, unknown 34.2
Periaquaductal grey, lateral
nTPM: 47.3
2053 Male, age 18, unknown 54.3
2272 Male, age 74, both hemispheres 50.9
2140 Male, age 76, both hemispheres 36.9
Pretectal area
nTPM: 72.9
2007 Male, age 72, unknown 93.0
1817 Female, age 42, unknown 89.4
1815 Male, age 53, unknown 87.1
2316 Male, age 76, right hemisphere 76.1
1816 Male, age 51, unknown 75.3
1944 Female, age 72, unknown 74.7
2407 Male, age 75, both hemispheres 71.5
2667 Female, age 75, unknown 67.7
2825 Male, age 18, unknown 62.6
2224 Female, age 72, unknown 57.7
2273 Male, age 74, both hemispheres 47.4
Red nucleus
nTPM: 98.3
2503 Female, age 72, unknown 121.6
1865 Male, age 51, unknown 111.6
2785 Male, age 18, unknown 108.0
2823 Male, age 76, right hemisphere 106.8
2588 Male, age 74, left hemisphere 105.2
1904 Male, age 53, unknown 102.1
2769 Male, age 72, unknown 99.1
2227 Male, age 72, unknown 97.6
1821 Female, age 72, unknown 93.6
1954 Female, age 42, unknown 86.6
2725 Female, age 75, unknown 79.1
2584 Male, age 75, left hemisphere 68.2
Substantia nigra
nTPM: 59.6
1889 Female, age 72, unknown 88.2
2583 Male, age 75, right hemisphere 77.9
2409 Female, age 72, unknown 66.9
2590 Female, age 75, unknown 63.1
1941 Male, age 53, unknown 62.5
1851 Male, age 51, unknown 62.2
2241 Male, age 72, unknown 49.0
2665 Male, age 74, both hemispheres 43.1
2699 Male, age 18, unknown 42.5
1916 Female, age 42, unknown 40.9
Superior colliculus
nTPM: 82.4
1913 Female, age 42, unknown 107.5
1995 Male, age 72, unknown 100.1
2668 Female, age 75, unknown 99.8
1895 Male, age 76, right hemisphere 96.3
1796 Male, age 53, unknown 78.8
2587 Male, age 74, left hemisphere 73.7
2261 Male, age 18, unknown 73.6
2087 Female, age 72, unknown 72.6
1839 Male, age 51, unknown 69.9
2664 Male, age 75, both hemispheres 52.2
Ventral tegmental area
nTPM: 68.1
2223 Female, age 72, unknown 87.9
2410 Female, age 72, unknown 87.3
1942 Male, age 51, unknown 61.4
2021 Male, age 53, unknown 57.7
1915 Female, age 42, unknown 57.4
2218 Male, age 76, both hemispheres 57.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 24.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.1
Samples: 139

Max nTPM: 57.4
Min nTPM: 5.3
Std nTPM: 11.7
Median nTPM: 21.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 57.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 57.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 55.6
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 54.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 53.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 53.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 52.4
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 51.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 51.5
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 49.2
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 49.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 113.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 113.4
FF:10158-103A5 76 years, female 113.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 88.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 80.8
Samples: 4

Max nTPM: 113.6
Min nTPM: 69.0
Sample A Female 69.0
Sample B Female 70.1
Sample C Male 70.5
Sample D Male 113.6
Midbrain
nTPM: 88.7
Samples: 4

Max nTPM: 97.5
Min nTPM: 76.0
Sample A Female 97.5
Sample B Female 86.5
Sample C Male 94.6
Sample D Male 76.0
Periaqueductal gray
nTPM: 73.0
Samples: 3

Max nTPM: 89.5
Min nTPM: 59.2
Sample B Female 89.5
Sample C Male 59.2
Sample D Male 70.3
Superior colliculi
nTPM: 80.5
Samples: 4

Max nTPM: 94.8
Min nTPM: 65.6
Sample A Female 73.5
Sample B Female 65.6
Sample C Male 94.8
Sample D Male 88.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 64.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 64.9
Samples: 4

Max nTPM: 74.6
Min nTPM: 53.2
Sample A Male 53.2
Sample B Male 63.4
Sample C Female 74.6
Sample D Female 68.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.2
855 Antisense, RP_Baylor_102987, Mouse strain C57BL/6J (56 days, male) 2.2
856 Antisense, RP_Baylor_102987, Mouse strain C57BL/6J (56 days, male) 0.8

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