MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:61.5 nTPM
HPA Brain:37.6 nTPM
GTEx:61.5 nTPM
FANTOM5:72.7 Scaled Tags Per Million
Pig:40.1 nTPM
Mouse:163.7 nTPM
Allen mouse:11.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 37.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 31.9
2666 Male, age 74, left hemisphere 40.9
1827 Male, age 72, unknown 36.0
1830 Male, age 51, unknown 34.1
2219 Male, age 76, both hemispheres 33.3
1833 Male, age 53, unknown 32.3
1870 Female, age 42, unknown 32.2
2411 Female, age 72, unknown 31.1
2828 Female, age 72, unknown 29.0
2019 Male, age 18, unknown 26.5
2586 Male, age 75, left hemisphere 24.1
Dorsal raphe nucleus
nTPM: 29.4
2750 Male, age 76, both hemispheres 33.1
1828 Male, age 53, unknown 28.9
2298 Female, age 72, unknown 28.8
2016 Female, age 72, unknown 28.6
2047 Male, age 72, unknown 27.3
Inferior colliculus
nTPM: 32.3
2849 Male, age 72, unknown 38.6
1848 Female, age 42, unknown 32.0
1890 Male, age 53, unknown 31.6
2097 Female, age 72, unknown 27.0
Median raphe nucleus
nTPM: 37.6
2220 Male, age 76, midline 37.6
Periaquaductal grey, anterior
nTPM: 30.9
1795 Male, age 51, unknown 32.3
1947 Male, age 18, unknown 30.6
2502 Female, age 75, unknown 29.9
Periaquaductal grey, dorsal
nTPM: 34.8
2850 Male, age 76, both hemispheres 40.8
1831 Male, age 72, unknown 36.0
1840 Male, age 53, unknown 32.8
2464 Female, age 72, unknown 29.4
Periaquaductal grey, lateral
nTPM: 32.0
2140 Male, age 76, both hemispheres 34.4
2053 Male, age 18, unknown 32.5
2272 Male, age 74, both hemispheres 29.2
Pretectal area
nTPM: 33.3
2407 Male, age 75, both hemispheres 38.8
2825 Male, age 18, unknown 38.2
1816 Male, age 51, unknown 35.8
1944 Female, age 72, unknown 35.1
1817 Female, age 42, unknown 33.8
2007 Male, age 72, unknown 32.7
1815 Male, age 53, unknown 32.6
2273 Male, age 74, both hemispheres 32.4
2667 Female, age 75, unknown 30.7
2224 Female, age 72, unknown 30.5
2316 Male, age 76, right hemisphere 25.6
Red nucleus
nTPM: 32.2
2725 Female, age 75, unknown 37.4
2823 Male, age 76, right hemisphere 36.6
2588 Male, age 74, left hemisphere 34.0
1904 Male, age 53, unknown 33.2
2584 Male, age 75, left hemisphere 32.5
1954 Female, age 42, unknown 31.9
2785 Male, age 18, unknown 31.4
1865 Male, age 51, unknown 31.1
1821 Female, age 72, unknown 30.8
2503 Female, age 72, unknown 30.5
2769 Male, age 72, unknown 28.9
2227 Male, age 72, unknown 28.5
Substantia nigra
nTPM: 33.9
2665 Male, age 74, both hemispheres 37.5
2699 Male, age 18, unknown 37.2
2241 Male, age 72, unknown 36.6
1941 Male, age 53, unknown 36.3
2409 Female, age 72, unknown 35.2
1889 Female, age 72, unknown 34.1
1916 Female, age 42, unknown 31.6
2590 Female, age 75, unknown 30.7
2583 Male, age 75, right hemisphere 30.4
1851 Male, age 51, unknown 28.9
Superior colliculus
nTPM: 30.3
1839 Male, age 51, unknown 33.6
1796 Male, age 53, unknown 32.0
1895 Male, age 76, right hemisphere 32.0
2668 Female, age 75, unknown 31.8
1913 Female, age 42, unknown 30.6
2087 Female, age 72, unknown 30.3
2587 Male, age 74, left hemisphere 29.9
2261 Male, age 18, unknown 28.7
2664 Male, age 75, both hemispheres 27.6
1995 Male, age 72, unknown 26.5
Ventral tegmental area
nTPM: 30.5
2218 Male, age 76, both hemispheres 35.0
2223 Female, age 72, unknown 32.6
1915 Female, age 42, unknown 32.5
2410 Female, age 72, unknown 28.3
2021 Male, age 53, unknown 27.7
1942 Male, age 51, unknown 27.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 61.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 61.5
Samples: 139

Max nTPM: 110.4
Min nTPM: 26.8
Std nTPM: 14.3
Median nTPM: 59.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 110.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 105.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 99.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 98.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 98.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 97.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 93.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 86.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 85.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 84.9
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 84.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 72.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 72.7
FF:10158-103A5 76 years, female 72.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 40.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 40.0
Samples: 4

Max nTPM: 43.8
Min nTPM: 36.6
Sample A Female 38.7
Sample B Female 43.8
Sample C Male 40.8
Sample D Male 36.6
Midbrain
nTPM: 40.1
Samples: 4

Max nTPM: 46.0
Min nTPM: 34.9
Sample A Female 39.8
Sample B Female 46.0
Sample C Male 39.8
Sample D Male 34.9
Periaqueductal gray
nTPM: 37.6
Samples: 3

Max nTPM: 42.3
Min nTPM: 33.6
Sample B Female 42.3
Sample C Male 36.9
Sample D Male 33.6
Superior colliculi
nTPM: 39.4
Samples: 4

Max nTPM: 42.0
Min nTPM: 36.7
Sample A Female 38.0
Sample B Female 36.7
Sample C Male 42.0
Sample D Male 41.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 163.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 163.7
Samples: 4

Max nTPM: 168.6
Min nTPM: 155.4
Sample A Male 155.4
Sample B Male 162.8
Sample C Female 168.6
Sample D Female 167.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 11.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.4
70431229 Antisense, RP_050614_02_D09, Mouse strain C57BL/6J (56 days, male) 11.4

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