HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.6 nTPM
HPA Brain:48.8 nTPM
GTEx:20.6 nTPM
FANTOM5:5.7 Scaled Tags Per Million
Pig:13.9 nTPM
Mouse:8.7 nTPM
Allen mouse:1.1 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 48.8
Sample id Sample description nTPM
Hippocampus
nTPM: 48.8
2529 Female, age 94, left hemisphere 63.3
1911 Female, age 85, right hemisphere 55.4
2148 Female, age 91, left hemisphere 51.4
1898 Male, age 80, left hemisphere 42.5
2621 Female, age 67, right hemisphere 40.6
1855 Male, age 76, left hemisphere 39.5
Dentate gyrus
nTPM: 43.1
2528 Male, age 74, both hemispheres 57.7
2246 Female, age 85, both hemispheres 45.1
2530 Female, age 94, left hemisphere 40.1
2010 Male, age 76, both hemispheres 39.6
1927 Female, age 91, both hemispheres 39.1
2531 Female, age 67, both hemispheres 37.0
Entorhinal gyrus
nTPM: 37.5
2117 Female, age 91, right hemisphere 53.1
2686 Male, age 75, right hemisphere 44.4
2764 Male, age 80, right hemisphere 41.1
1787 Male, age 76, left hemisphere 36.3
1938 Female, age 85, left hemisphere 26.3
2613 Female, age 94, left hemisphere 24.0
Hippocampus, CA1
nTPM: 45.4
2527 Male, age 74, both hemispheres 58.6
2082 Female, age 91, right hemisphere 57.1
1873 Female, age 85, both hemispheres 46.8
2045 Male, age 76, both hemispheres 35.5
2749 Male, age 80, left hemisphere 28.8
Hippocampus, CA2
nTPM: 42.3
2113 Female, age 91, right hemisphere 60.2
2249 Male, age 74, both hemispheres 49.4
1963 Male, age 80, left hemisphere 42.3
1940 Female, age 85, left hemisphere 39.0
2437 Female, age 94, left hemisphere 35.8
1892 Male, age 76, both hemispheres 27.4
Hippocampus, CA3
nTPM: 42.0
2861 Female, age 67, both hemispheres 50.4
1891 Female, age 85, both hemispheres 48.5
2436 Male, age 74, both hemispheres 42.4
2620 Female, age 94, left hemisphere 40.3
2137 Male, age 80, left hemisphere 38.5
1867 Male, age 76, both hemispheres 31.8
Parahippocampal cortex
nTPM: 39.6
2692 Male, age 74, both hemispheres 47.8
2622 Female, age 67, right hemisphere 47.2
2245 Female, age 91, both hemispheres 44.8
2018 Male, age 76, both hemispheres 44.6
2250 Female, age 67, right hemisphere 37.9
1933 Female, age 85, both hemispheres 35.9
1990 Female, age 91, right hemisphere 35.3
2693 Female, age 94, both hemispheres 34.5
2532 Female, age 72, left hemisphere 34.4
1850 Male, age 80, both hemispheres 33.1
Perirhinal gyrus
nTPM: 36.1
2848 Male, age 76, right hemisphere 44.1
1841 Female, age 85, right hemisphere 37.6
2521 Female, age 94, right hemisphere 33.7
1847 Female, age 91, left hemisphere 33.2
1794 Male, age 80, right hemisphere 32.0
Subiculum
nTPM: 43.6
2619 Male, age 74, both hemispheres 56.0
2729 Female, age 91, right hemisphere 55.7
1901 Male, age 80, both hemispheres 39.1
2042 Male, age 76, both hemispheres 38.5
1977 Female, age 85, both hemispheres 36.8
2438 Female, age 94, left hemisphere 35.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 20.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 20.6
Samples: 197

Max nTPM: 52.0
Min nTPM: 5.4
Std nTPM: 7.7
Median nTPM: 19.4
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 52.0
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 48.3
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 48.1
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 45.7
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 44.4
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 42.1
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 41.7
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 38.1
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 32.9
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 32.6
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 31.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 5.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 5.7
FF:10169-103B7 60 years, female 7.2
FF:10153-102I9 76 years, female 4.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 13.9
Pig sample Sample description nTPM
Subiculum
nTPM: 12.7
Samples: 4

Max nTPM: 16.3
Min nTPM: 10.8
Sample A Female 16.3
Sample B Female 10.8
Sample C Male 11.7
Sample D Male 12.0
Dorsal hippocampus
nTPM: 13.3
Samples: 4

Max nTPM: 17.1
Min nTPM: 11.1
Sample A Female 17.1
Sample B Female 13.2
Sample C Male 11.9
Sample D Male 11.1
Entorhinal cortex
nTPM: 12.9
Samples: 4

Max nTPM: 16.9
Min nTPM: 10.7
Sample A Female 12.0
Sample B Female 12.1
Sample C Male 16.9
Sample D Male 10.7
Ventral hippocampus
nTPM: 13.9
Samples: 4

Max nTPM: 16.1
Min nTPM: 11.1
Sample A Female 13.3
Sample B Female 11.1
Sample C Male 15.0
Sample D Male 16.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 8.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 6.8
Samples: 4

Max nTPM: 8.5
Min nTPM: 4.8
Sample A Male 8.5
Sample B Male 7.3
Sample C Female 6.6
Sample D Female 4.8
Hippocampal formation
nTPM: 8.7
Samples: 4

Max nTPM: 9.8
Min nTPM: 7.5
Sample A Male 7.5
Sample B Male 9.8
Sample C Female 9.3
Sample D Female 8.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.1
67765718 Antisense, RP_040916_01_F01, Mouse strain C57BL/6J (56 days, male) 1.1

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