MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:43.7 nTPM
HPA Brain:139.9 nTPM
GTEx:43.7 nTPM
FANTOM5:36.3 Scaled Tags Per Million
Pig:147.1 nTPM
Mouse:62.3 nTPM
Allen mouse:1.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 139.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 90.3
2586 Male, age 75, left hemisphere 123.6
2019 Male, age 18, unknown 111.0
1827 Male, age 72, unknown 101.9
2828 Female, age 72, unknown 100.8
2219 Male, age 76, both hemispheres 96.2
2666 Male, age 74, left hemisphere 90.5
1833 Male, age 53, unknown 77.7
2411 Female, age 72, unknown 73.7
1870 Female, age 42, unknown 66.1
1830 Male, age 51, unknown 61.2
Dorsal raphe nucleus
nTPM: 94.8
2298 Female, age 72, unknown 115.8
2016 Female, age 72, unknown 112.5
1828 Male, age 53, unknown 106.0
2047 Male, age 72, unknown 73.7
2750 Male, age 76, both hemispheres 65.9
Inferior colliculus
nTPM: 86.1
2097 Female, age 72, unknown 104.5
1890 Male, age 53, unknown 90.3
1848 Female, age 42, unknown 80.5
2849 Male, age 72, unknown 69.2
Median raphe nucleus
nTPM: 75.3
2220 Male, age 76, midline 75.3
Periaquaductal grey, anterior
nTPM: 89.8
1795 Male, age 51, unknown 116.9
2502 Female, age 75, unknown 89.7
1947 Male, age 18, unknown 62.7
Periaquaductal grey, dorsal
nTPM: 118.0
1831 Male, age 72, unknown 150.4
1840 Male, age 53, unknown 115.1
2850 Male, age 76, both hemispheres 109.0
2464 Female, age 72, unknown 97.4
Periaquaductal grey, lateral
nTPM: 108.8
2272 Male, age 74, both hemispheres 123.5
2140 Male, age 76, both hemispheres 102.0
2053 Male, age 18, unknown 101.0
Pretectal area
nTPM: 139.9
1816 Male, age 51, unknown 257.7
1944 Female, age 72, unknown 192.8
1815 Male, age 53, unknown 182.6
1817 Female, age 42, unknown 170.8
2007 Male, age 72, unknown 167.9
2224 Female, age 72, unknown 129.4
2273 Male, age 74, both hemispheres 124.8
2667 Female, age 75, unknown 98.5
2407 Male, age 75, both hemispheres 76.3
2825 Male, age 18, unknown 70.2
2316 Male, age 76, right hemisphere 67.5
Red nucleus
nTPM: 74.9
2503 Female, age 72, unknown 106.0
2785 Male, age 18, unknown 103.7
2725 Female, age 75, unknown 102.2
1821 Female, age 72, unknown 77.2
2823 Male, age 76, right hemisphere 76.8
1904 Male, age 53, unknown 67.0
2588 Male, age 74, left hemisphere 66.6
2584 Male, age 75, left hemisphere 64.2
2769 Male, age 72, unknown 60.7
2227 Male, age 72, unknown 60.1
1954 Female, age 42, unknown 57.3
1865 Male, age 51, unknown 56.5
Substantia nigra
nTPM: 120.9
1916 Female, age 42, unknown 152.5
1889 Female, age 72, unknown 151.5
2409 Female, age 72, unknown 130.3
1851 Male, age 51, unknown 130.2
2241 Male, age 72, unknown 127.2
2699 Male, age 18, unknown 123.9
2590 Female, age 75, unknown 109.7
2583 Male, age 75, right hemisphere 104.0
2665 Male, age 74, both hemispheres 91.0
1941 Male, age 53, unknown 88.5
Superior colliculus
nTPM: 113.7
2087 Female, age 72, unknown 164.3
2261 Male, age 18, unknown 159.2
1796 Male, age 53, unknown 130.6
1913 Female, age 42, unknown 118.7
1995 Male, age 72, unknown 117.3
2668 Female, age 75, unknown 107.1
2664 Male, age 75, both hemispheres 106.0
2587 Male, age 74, left hemisphere 89.6
1839 Male, age 51, unknown 74.1
1895 Male, age 76, right hemisphere 70.1
Ventral tegmental area
nTPM: 100.5
2218 Male, age 76, both hemispheres 127.8
2410 Female, age 72, unknown 124.8
1915 Female, age 42, unknown 103.8
1942 Male, age 51, unknown 90.9
2021 Male, age 53, unknown 79.9
2223 Female, age 72, unknown 75.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 43.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 43.7
Samples: 139

Max nTPM: 125.5
Min nTPM: 0.0
Std nTPM: 24.7
Median nTPM: 42.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 125.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 101.4
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 92.6
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 91.3
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 91.3
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 90.3
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 87.3
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 87.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 83.6
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 82.9
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 81.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 36.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 36.3
FF:10158-103A5 76 years, female 36.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 147.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 138.5
Samples: 4

Max nTPM: 178.9
Min nTPM: 108.7
Sample A Female 150.0
Sample B Female 116.4
Sample C Male 178.9
Sample D Male 108.7
Midbrain
nTPM: 147.1
Samples: 4

Max nTPM: 254.0
Min nTPM: 39.4
Sample A Female 39.4
Sample B Female 191.6
Sample C Male 254.0
Sample D Male 103.5
Periaqueductal gray
nTPM: 136.2
Samples: 3

Max nTPM: 156.2
Min nTPM: 105.0
Sample B Female 156.2
Sample C Male 147.3
Sample D Male 105.0
Superior colliculi
nTPM: 127.1
Samples: 4

Max nTPM: 183.6
Min nTPM: 64.3
Sample A Female 118.1
Sample B Female 64.3
Sample C Male 183.6
Sample D Male 142.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 62.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 62.3
Samples: 4

Max nTPM: 64.7
Min nTPM: 61.1
Sample A Male 61.3
Sample B Male 61.1
Sample C Female 64.7
Sample D Female 62.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
70431283 Antisense, RP_050614_02_E07, Mouse strain C57BL/6J (56 days, male) 1.2

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