MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:40.7 nTPM
HPA Brain:197.4 nTPM
GTEx:40.7 nTPM
FANTOM5:26.9 Scaled Tags Per Million
Pig:75.9 nTPM
Mouse:50.2 nTPM
Allen mouse:4.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 197.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 111.9
2586 Male, age 75, left hemisphere 150.9
2219 Male, age 76, both hemispheres 125.7
2828 Female, age 72, unknown 125.5
1833 Male, age 53, unknown 122.2
2666 Male, age 74, left hemisphere 104.9
2411 Female, age 72, unknown 103.1
1827 Male, age 72, unknown 100.4
1830 Male, age 51, unknown 96.6
1870 Female, age 42, unknown 95.9
2019 Male, age 18, unknown 93.7
Dorsal raphe nucleus
nTPM: 157.1
2016 Female, age 72, unknown 186.5
1828 Male, age 53, unknown 175.3
2047 Male, age 72, unknown 157.0
2298 Female, age 72, unknown 143.3
2750 Male, age 76, both hemispheres 123.4
Inferior colliculus
nTPM: 131.8
1890 Male, age 53, unknown 162.9
2097 Female, age 72, unknown 138.5
2849 Male, age 72, unknown 113.2
1848 Female, age 42, unknown 112.7
Median raphe nucleus
nTPM: 176.7
2220 Male, age 76, midline 176.7
Periaquaductal grey, anterior
nTPM: 117.4
2502 Female, age 75, unknown 131.6
1795 Male, age 51, unknown 117.7
1947 Male, age 18, unknown 102.9
Periaquaductal grey, dorsal
nTPM: 173.4
1831 Male, age 72, unknown 233.9
2850 Male, age 76, both hemispheres 191.7
1840 Male, age 53, unknown 143.9
2464 Female, age 72, unknown 124.2
Periaquaductal grey, lateral
nTPM: 154.8
2140 Male, age 76, both hemispheres 191.2
2272 Male, age 74, both hemispheres 139.3
2053 Male, age 18, unknown 133.9
Pretectal area
nTPM: 114.3
2273 Male, age 74, both hemispheres 151.0
2667 Female, age 75, unknown 137.2
2224 Female, age 72, unknown 130.4
2825 Male, age 18, unknown 122.6
2316 Male, age 76, right hemisphere 120.7
1944 Female, age 72, unknown 114.4
2407 Male, age 75, both hemispheres 110.9
1815 Male, age 53, unknown 101.6
1816 Male, age 51, unknown 100.9
1817 Female, age 42, unknown 95.6
2007 Male, age 72, unknown 72.6
Red nucleus
nTPM: 122.6
1954 Female, age 42, unknown 152.5
1821 Female, age 72, unknown 146.6
2769 Male, age 72, unknown 128.8
2823 Male, age 76, right hemisphere 128.6
2227 Male, age 72, unknown 128.4
1904 Male, age 53, unknown 126.7
2725 Female, age 75, unknown 121.8
1865 Male, age 51, unknown 120.2
2503 Female, age 72, unknown 118.2
2584 Male, age 75, left hemisphere 112.0
2588 Male, age 74, left hemisphere 103.2
2785 Male, age 18, unknown 84.2
Substantia nigra
nTPM: 197.4
2699 Male, age 18, unknown 382.2
1916 Female, age 42, unknown 332.7
2241 Male, age 72, unknown 221.3
1851 Male, age 51, unknown 206.9
1941 Male, age 53, unknown 165.8
2409 Female, age 72, unknown 165.6
2665 Male, age 74, both hemispheres 140.5
2590 Female, age 75, unknown 122.5
2583 Male, age 75, right hemisphere 120.6
1889 Female, age 72, unknown 116.3
Superior colliculus
nTPM: 108.9
2664 Male, age 75, both hemispheres 143.0
2087 Female, age 72, unknown 118.1
2668 Female, age 75, unknown 116.0
1995 Male, age 72, unknown 109.9
1796 Male, age 53, unknown 106.1
1839 Male, age 51, unknown 104.9
2261 Male, age 18, unknown 103.2
2587 Male, age 74, left hemisphere 101.8
1913 Female, age 42, unknown 93.9
1895 Male, age 76, right hemisphere 91.8
Ventral tegmental area
nTPM: 168.6
1915 Female, age 42, unknown 218.5
1942 Male, age 51, unknown 191.0
2218 Male, age 76, both hemispheres 179.9
2410 Female, age 72, unknown 152.8
2021 Male, age 53, unknown 146.8
2223 Female, age 72, unknown 122.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 40.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 40.7
Samples: 139

Max nTPM: 75.9
Min nTPM: 16.0
Std nTPM: 12.2
Median nTPM: 39.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 75.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 74.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 69.3
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 66.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 66.5
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 66.3
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 66.3
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 64.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 63.1
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 61.5
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 60.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 26.9
FF:10158-103A5 76 years, female 26.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 75.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 75.9
Samples: 4

Max nTPM: 94.2
Min nTPM: 61.7
Sample A Female 75.5
Sample B Female 72.2
Sample C Male 94.2
Sample D Male 61.7
Midbrain
nTPM: 64.5
Samples: 4

Max nTPM: 74.1
Min nTPM: 60.5
Sample A Female 61.1
Sample B Female 74.1
Sample C Male 60.5
Sample D Male 62.3
Periaqueductal gray
nTPM: 68.6
Samples: 3

Max nTPM: 74.2
Min nTPM: 62.8
Sample B Female 74.2
Sample C Male 62.8
Sample D Male 68.7
Superior colliculi
nTPM: 64.8
Samples: 4

Max nTPM: 74.7
Min nTPM: 57.5
Sample A Female 61.9
Sample B Female 74.7
Sample C Male 57.5
Sample D Male 65.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 50.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 50.3
Samples: 4

Max nTPM: 51.7
Min nTPM: 48.6
Sample A Male 48.6
Sample B Male 50.5
Sample C Female 50.3
Sample D Female 51.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.3
71280976 Antisense, RP_050818_02_A01, Mouse strain C57BL/6J (56 days, male) 4.3
73616034 Antisense, RP_050818_02_A01, Mouse strain C57BL/6J (56 days, male) 3.1

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