MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:3.4 nTPM
HPA Brain:27.2 nTPM
GTEx:3.4 nTPM
FANTOM5:14.3 Scaled Tags Per Million
Pig:12.8 nTPM
Mouse:4.1 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 27.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.0
2019 Male, age 18, unknown 31.4
2219 Male, age 76, both hemispheres 28.6
1830 Male, age 51, unknown 26.7
1827 Male, age 72, unknown 24.6
2666 Male, age 74, left hemisphere 23.9
1833 Male, age 53, unknown 23.7
2411 Female, age 72, unknown 23.6
2828 Female, age 72, unknown 23.1
1870 Female, age 42, unknown 18.3
2586 Male, age 75, left hemisphere 15.8
Dorsal raphe nucleus
nTPM: 21.7
2016 Female, age 72, unknown 22.5
2047 Male, age 72, unknown 22.5
2750 Male, age 76, both hemispheres 22.4
1828 Male, age 53, unknown 21.1
2298 Female, age 72, unknown 20.1
Inferior colliculus
nTPM: 26.4
2097 Female, age 72, unknown 27.9
1848 Female, age 42, unknown 26.6
1890 Male, age 53, unknown 26.6
2849 Male, age 72, unknown 24.7
Median raphe nucleus
nTPM: 22.8
2220 Male, age 76, midline 22.8
Periaquaductal grey, anterior
nTPM: 23.7
1947 Male, age 18, unknown 25.8
1795 Male, age 51, unknown 23.3
2502 Female, age 75, unknown 22.1
Periaquaductal grey, dorsal
nTPM: 24.1
1831 Male, age 72, unknown 25.6
2464 Female, age 72, unknown 24.9
1840 Male, age 53, unknown 23.4
2850 Male, age 76, both hemispheres 22.4
Periaquaductal grey, lateral
nTPM: 23.7
2272 Male, age 74, both hemispheres 26.0
2053 Male, age 18, unknown 23.5
2140 Male, age 76, both hemispheres 21.5
Pretectal area
nTPM: 27.0
1944 Female, age 72, unknown 34.8
2667 Female, age 75, unknown 32.2
1816 Male, age 51, unknown 29.5
2007 Male, age 72, unknown 28.9
2273 Male, age 74, both hemispheres 26.4
1815 Male, age 53, unknown 26.1
2407 Male, age 75, both hemispheres 26.1
2224 Female, age 72, unknown 24.7
2316 Male, age 76, right hemisphere 24.3
1817 Female, age 42, unknown 22.8
2825 Male, age 18, unknown 20.9
Red nucleus
nTPM: 23.8
2588 Male, age 74, left hemisphere 27.5
2823 Male, age 76, right hemisphere 26.5
2785 Male, age 18, unknown 26.0
2584 Male, age 75, left hemisphere 25.7
1904 Male, age 53, unknown 24.0
1865 Male, age 51, unknown 23.6
1954 Female, age 42, unknown 23.5
2725 Female, age 75, unknown 23.3
2503 Female, age 72, unknown 22.6
1821 Female, age 72, unknown 21.4
2769 Male, age 72, unknown 20.9
2227 Male, age 72, unknown 20.1
Substantia nigra
nTPM: 27.2
1941 Male, age 53, unknown 33.6
2241 Male, age 72, unknown 30.3
2409 Female, age 72, unknown 29.0
1916 Female, age 42, unknown 28.9
1889 Female, age 72, unknown 28.6
2665 Male, age 74, both hemispheres 25.2
2590 Female, age 75, unknown 24.9
2583 Male, age 75, right hemisphere 24.7
1851 Male, age 51, unknown 24.3
2699 Male, age 18, unknown 22.4
Superior colliculus
nTPM: 25.2
2087 Female, age 72, unknown 33.4
1895 Male, age 76, right hemisphere 28.7
2587 Male, age 74, left hemisphere 26.6
1995 Male, age 72, unknown 25.4
2668 Female, age 75, unknown 24.4
2261 Male, age 18, unknown 24.2
1913 Female, age 42, unknown 23.3
1839 Male, age 51, unknown 23.1
1796 Male, age 53, unknown 23.0
2664 Male, age 75, both hemispheres 19.7
Ventral tegmental area
nTPM: 24.9
2218 Male, age 76, both hemispheres 28.8
2410 Female, age 72, unknown 26.2
1915 Female, age 42, unknown 25.0
1942 Male, age 51, unknown 24.3
2021 Male, age 53, unknown 22.7
2223 Female, age 72, unknown 22.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 3.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 3.4
Samples: 139

Max nTPM: 8.9
Min nTPM: 0.4
Std nTPM: 1.5
Median nTPM: 3.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 8.9
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 8.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 7.5
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 6.5
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 5.9
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 5.9
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 5.8
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 5.7
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 5.7
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 5.6
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 5.6
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 14.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 14.3
FF:10158-103A5 76 years, female 14.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 12.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 12.8
Samples: 4

Max nTPM: 20.7
Min nTPM: 8.0
Sample A Female 8.0
Sample B Female 20.7
Sample C Male 8.5
Sample D Male 13.9
Midbrain
nTPM: 10.5
Samples: 4

Max nTPM: 13.8
Min nTPM: 7.6
Sample A Female 13.8
Sample B Female 7.6
Sample C Male 11.5
Sample D Male 9.1
Periaqueductal gray
nTPM: 6.3
Samples: 3

Max nTPM: 6.6
Min nTPM: 5.9
Sample B Female 6.6
Sample C Male 5.9
Sample D Male 6.5
Superior colliculi
nTPM: 12.3
Samples: 4

Max nTPM: 14.8
Min nTPM: 10.0
Sample A Female 12.8
Sample B Female 14.8
Sample C Male 11.6
Sample D Male 10.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 4.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 4.0
Samples: 4

Max nTPM: 4.6
Min nTPM: 3.6
Sample A Male 3.6
Sample B Male 4.1
Sample C Female 4.6
Sample D Female 3.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
78534532 Antisense, RP_070620_02_C02, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org