MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.0 nTPM
HPA Brain:32.5 nTPM
GTEx:11.0 nTPM
FANTOM5:72.5 Scaled Tags Per Million
Pig:34.6 nTPM
Mouse:41.2 nTPM
Allen mouse:1.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 32.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 25.7
2219 Male, age 76, both hemispheres 29.5
1870 Female, age 42, unknown 28.0
2411 Female, age 72, unknown 27.7
1833 Male, age 53, unknown 27.5
1827 Male, age 72, unknown 27.2
2019 Male, age 18, unknown 25.7
1830 Male, age 51, unknown 25.2
2666 Male, age 74, left hemisphere 22.9
2828 Female, age 72, unknown 22.5
2586 Male, age 75, left hemisphere 20.7
Dorsal raphe nucleus
nTPM: 26.8
2298 Female, age 72, unknown 28.7
1828 Male, age 53, unknown 27.3
2047 Male, age 72, unknown 27.1
2750 Male, age 76, both hemispheres 25.8
2016 Female, age 72, unknown 25.3
Inferior colliculus
nTPM: 28.7
2849 Male, age 72, unknown 31.3
1848 Female, age 42, unknown 29.0
2097 Female, age 72, unknown 28.6
1890 Male, age 53, unknown 26.0
Median raphe nucleus
nTPM: 32.5
2220 Male, age 76, midline 32.5
Periaquaductal grey, anterior
nTPM: 26.5
1947 Male, age 18, unknown 29.0
2502 Female, age 75, unknown 26.2
1795 Male, age 51, unknown 24.3
Periaquaductal grey, dorsal
nTPM: 28.7
1840 Male, age 53, unknown 32.0
2850 Male, age 76, both hemispheres 31.6
2464 Female, age 72, unknown 25.7
1831 Male, age 72, unknown 25.6
Periaquaductal grey, lateral
nTPM: 26.8
2140 Male, age 76, both hemispheres 27.9
2272 Male, age 74, both hemispheres 26.6
2053 Male, age 18, unknown 25.8
Pretectal area
nTPM: 27.8
1817 Female, age 42, unknown 29.8
1816 Male, age 51, unknown 29.1
2007 Male, age 72, unknown 29.1
2667 Female, age 75, unknown 29.0
2224 Female, age 72, unknown 28.8
1944 Female, age 72, unknown 28.7
1815 Male, age 53, unknown 27.1
2316 Male, age 76, right hemisphere 26.3
2825 Male, age 18, unknown 26.3
2273 Male, age 74, both hemispheres 25.9
2407 Male, age 75, both hemispheres 25.6
Red nucleus
nTPM: 25.5
2725 Female, age 75, unknown 29.3
1821 Female, age 72, unknown 29.0
1954 Female, age 42, unknown 26.7
1904 Male, age 53, unknown 25.7
2588 Male, age 74, left hemisphere 25.2
2785 Male, age 18, unknown 25.1
1865 Male, age 51, unknown 25.0
2823 Male, age 76, right hemisphere 25.0
2227 Male, age 72, unknown 24.9
2503 Female, age 72, unknown 24.2
2769 Male, age 72, unknown 24.0
2584 Male, age 75, left hemisphere 22.2
Substantia nigra
nTPM: 30.6
1916 Female, age 42, unknown 36.8
2241 Male, age 72, unknown 34.4
2409 Female, age 72, unknown 34.2
1851 Male, age 51, unknown 31.1
1941 Male, age 53, unknown 30.5
1889 Female, age 72, unknown 30.3
2699 Male, age 18, unknown 29.3
2665 Male, age 74, both hemispheres 27.6
2583 Male, age 75, right hemisphere 25.9
2590 Female, age 75, unknown 25.4
Superior colliculus
nTPM: 25.6
1895 Male, age 76, right hemisphere 30.7
2587 Male, age 74, left hemisphere 27.8
1839 Male, age 51, unknown 27.7
2261 Male, age 18, unknown 26.4
2087 Female, age 72, unknown 25.7
2668 Female, age 75, unknown 25.5
1796 Male, age 53, unknown 25.0
1913 Female, age 42, unknown 22.7
1995 Male, age 72, unknown 22.0
2664 Male, age 75, both hemispheres 22.0
Ventral tegmental area
nTPM: 27.5
2218 Male, age 76, both hemispheres 29.9
1915 Female, age 42, unknown 29.7
2410 Female, age 72, unknown 27.9
1942 Male, age 51, unknown 26.3
2223 Female, age 72, unknown 25.8
2021 Male, age 53, unknown 25.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 11.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.0
Samples: 139

Max nTPM: 20.9
Min nTPM: 5.4
Std nTPM: 2.8
Median nTPM: 11.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 20.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 19.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 19.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 19.1
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 17.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 16.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 15.9
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 15.5
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 15.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 15.3
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 15.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 72.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 72.5
FF:10158-103A5 76 years, female 72.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 34.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 33.6
Samples: 4

Max nTPM: 40.2
Min nTPM: 29.4
Sample A Female 34.4
Sample B Female 30.3
Sample C Male 40.2
Sample D Male 29.4
Midbrain
nTPM: 34.6
Samples: 4

Max nTPM: 40.8
Min nTPM: 28.2
Sample A Female 35.4
Sample B Female 28.2
Sample C Male 40.8
Sample D Male 34.0
Periaqueductal gray
nTPM: 32.0
Samples: 3

Max nTPM: 38.2
Min nTPM: 27.5
Sample B Female 27.5
Sample C Male 38.2
Sample D Male 30.3
Superior colliculi
nTPM: 34.5
Samples: 4

Max nTPM: 37.2
Min nTPM: 32.2
Sample A Female 33.8
Sample B Female 32.2
Sample C Male 37.2
Sample D Male 34.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 41.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 41.2
Samples: 4

Max nTPM: 44.3
Min nTPM: 36.6
Sample A Male 36.6
Sample B Male 42.9
Sample C Female 44.3
Sample D Female 41.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.3
70228657 Antisense, RP_050524_04_B09, Mouse strain C57BL/6J (56 days, male) 2.8
70717373 Antisense, RP_050419_01_E06, Mouse strain C57BL/6J (56 days, male) 0.9
69527890 Antisense, RP_050421_02_F10, Mouse strain C57BL/6J (56 days, male) 0.2

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