MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.5 nTPM
HPA Brain:108.2 nTPM
GTEx:11.5 nTPM
FANTOM5:74.7 Scaled Tags Per Million
Pig:55.5 nTPM
Mouse:8.1 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 108.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 79.6
1827 Male, age 72, unknown 94.4
2828 Female, age 72, unknown 92.6
2219 Male, age 76, both hemispheres 89.3
1833 Male, age 53, unknown 86.5
2586 Male, age 75, left hemisphere 83.8
1830 Male, age 51, unknown 76.6
2666 Male, age 74, left hemisphere 75.5
1870 Female, age 42, unknown 72.6
2411 Female, age 72, unknown 66.5
2019 Male, age 18, unknown 58.2
Dorsal raphe nucleus
nTPM: 81.8
2016 Female, age 72, unknown 100.4
1828 Male, age 53, unknown 85.2
2047 Male, age 72, unknown 84.1
2298 Female, age 72, unknown 79.7
2750 Male, age 76, both hemispheres 59.6
Inferior colliculus
nTPM: 102.5
2849 Male, age 72, unknown 136.8
1848 Female, age 42, unknown 120.6
1890 Male, age 53, unknown 79.5
2097 Female, age 72, unknown 73.2
Median raphe nucleus
nTPM: 68.7
2220 Male, age 76, midline 68.7
Periaquaductal grey, anterior
nTPM: 84.7
1795 Male, age 51, unknown 86.7
2502 Female, age 75, unknown 86.4
1947 Male, age 18, unknown 81.1
Periaquaductal grey, dorsal
nTPM: 108.2
1840 Male, age 53, unknown 127.0
2850 Male, age 76, both hemispheres 119.1
2464 Female, age 72, unknown 94.5
1831 Male, age 72, unknown 92.0
Periaquaductal grey, lateral
nTPM: 99.8
2140 Male, age 76, both hemispheres 120.0
2053 Male, age 18, unknown 94.8
2272 Male, age 74, both hemispheres 84.5
Pretectal area
nTPM: 85.9
2825 Male, age 18, unknown 100.4
2273 Male, age 74, both hemispheres 96.1
2667 Female, age 75, unknown 94.8
2224 Female, age 72, unknown 92.7
2316 Male, age 76, right hemisphere 86.7
1816 Male, age 51, unknown 85.8
1944 Female, age 72, unknown 80.6
2407 Male, age 75, both hemispheres 80.5
1817 Female, age 42, unknown 79.5
1815 Male, age 53, unknown 77.2
2007 Male, age 72, unknown 71.0
Red nucleus
nTPM: 75.2
1954 Female, age 42, unknown 86.6
2503 Female, age 72, unknown 85.8
1865 Male, age 51, unknown 81.0
2588 Male, age 74, left hemisphere 78.9
2227 Male, age 72, unknown 78.2
1904 Male, age 53, unknown 77.8
2769 Male, age 72, unknown 76.6
2725 Female, age 75, unknown 74.5
1821 Female, age 72, unknown 70.9
2584 Male, age 75, left hemisphere 67.5
2823 Male, age 76, right hemisphere 67.1
2785 Male, age 18, unknown 57.9
Substantia nigra
nTPM: 76.7
2699 Male, age 18, unknown 114.6
2665 Male, age 74, both hemispheres 85.7
2590 Female, age 75, unknown 83.3
2409 Female, age 72, unknown 82.3
1916 Female, age 42, unknown 76.4
1889 Female, age 72, unknown 74.4
2583 Male, age 75, right hemisphere 72.8
1851 Male, age 51, unknown 63.3
2241 Male, age 72, unknown 57.7
1941 Male, age 53, unknown 56.0
Superior colliculus
nTPM: 84.1
1839 Male, age 51, unknown 97.4
1895 Male, age 76, right hemisphere 93.0
2664 Male, age 75, both hemispheres 90.6
1796 Male, age 53, unknown 89.9
2261 Male, age 18, unknown 88.4
2087 Female, age 72, unknown 86.2
1995 Male, age 72, unknown 82.4
2587 Male, age 74, left hemisphere 77.7
1913 Female, age 42, unknown 68.6
2668 Female, age 75, unknown 66.8
Ventral tegmental area
nTPM: 70.8
2021 Male, age 53, unknown 84.6
1915 Female, age 42, unknown 74.8
2223 Female, age 72, unknown 68.1
1942 Male, age 51, unknown 66.2
2410 Female, age 72, unknown 65.9
2218 Male, age 76, both hemispheres 65.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 11.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.5
Samples: 139

Max nTPM: 22.4
Min nTPM: 4.2
Std nTPM: 3.5
Median nTPM: 10.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 22.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 19.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 19.7
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 19.6
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 19.2
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 18.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 18.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 18.2
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 17.1
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 16.9
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 16.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 74.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 74.7
FF:10158-103A5 76 years, female 74.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 55.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 46.1
Samples: 4

Max nTPM: 61.1
Min nTPM: 39.6
Sample A Female 40.3
Sample B Female 39.6
Sample C Male 43.3
Sample D Male 61.1
Midbrain
nTPM: 55.5
Samples: 4

Max nTPM: 68.9
Min nTPM: 42.7
Sample A Female 42.7
Sample B Female 55.7
Sample C Male 68.9
Sample D Male 54.6
Periaqueductal gray
nTPM: 53.9
Samples: 3

Max nTPM: 60.0
Min nTPM: 49.9
Sample B Female 60.0
Sample C Male 49.9
Sample D Male 51.9
Superior colliculi
nTPM: 49.7
Samples: 4

Max nTPM: 61.2
Min nTPM: 34.0
Sample A Female 44.5
Sample B Female 34.0
Sample C Male 61.2
Sample D Male 58.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 8.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 8.1
Samples: 4

Max nTPM: 9.4
Min nTPM: 6.3
Sample A Male 6.3
Sample B Male 8.6
Sample C Female 9.4
Sample D Female 8.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
73808606 Antisense, RP_051212_03_C08, Mouse strain C57BL/6J (56 days, male) 0.2
74431792 Antisense, RP_060207_02_E05, Mouse strain C57BL/6J (56 days, male) 0.0

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