MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.7 nTPM
HPA Brain:61.9 nTPM
GTEx:15.7 nTPM
FANTOM5:166.8 Scaled Tags Per Million
Pig:35.4 nTPM
Mouse:5.9 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 61.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 45.3
1830 Male, age 51, unknown 59.3
1833 Male, age 53, unknown 58.5
2411 Female, age 72, unknown 53.8
2019 Male, age 18, unknown 50.4
1870 Female, age 42, unknown 44.7
2828 Female, age 72, unknown 41.2
2666 Male, age 74, left hemisphere 39.6
2219 Male, age 76, both hemispheres 36.6
2586 Male, age 75, left hemisphere 36.3
1827 Male, age 72, unknown 32.8
Dorsal raphe nucleus
nTPM: 34.8
2750 Male, age 76, both hemispheres 64.3
2016 Female, age 72, unknown 33.5
1828 Male, age 53, unknown 33.3
2047 Male, age 72, unknown 24.3
2298 Female, age 72, unknown 18.5
Inferior colliculus
nTPM: 32.6
2849 Male, age 72, unknown 36.6
1890 Male, age 53, unknown 36.5
1848 Female, age 42, unknown 33.8
2097 Female, age 72, unknown 23.7
Median raphe nucleus
nTPM: 31.2
2220 Male, age 76, midline 31.2
Periaquaductal grey, anterior
nTPM: 27.5
2502 Female, age 75, unknown 32.6
1947 Male, age 18, unknown 26.7
1795 Male, age 51, unknown 23.2
Periaquaductal grey, dorsal
nTPM: 23.4
2464 Female, age 72, unknown 39.3
1831 Male, age 72, unknown 23.6
1840 Male, age 53, unknown 16.2
2850 Male, age 76, both hemispheres 14.3
Periaquaductal grey, lateral
nTPM: 24.4
2272 Male, age 74, both hemispheres 29.1
2053 Male, age 18, unknown 28.3
2140 Male, age 76, both hemispheres 15.8
Pretectal area
nTPM: 31.1
2316 Male, age 76, right hemisphere 48.7
1815 Male, age 53, unknown 39.6
2407 Male, age 75, both hemispheres 39.1
1817 Female, age 42, unknown 32.2
2825 Male, age 18, unknown 31.9
2667 Female, age 75, unknown 30.2
2007 Male, age 72, unknown 29.4
2224 Female, age 72, unknown 26.6
2273 Male, age 74, both hemispheres 23.5
1944 Female, age 72, unknown 21.1
1816 Male, age 51, unknown 20.2
Red nucleus
nTPM: 61.9
2823 Male, age 76, right hemisphere 89.5
1865 Male, age 51, unknown 75.0
1904 Male, age 53, unknown 68.2
2503 Female, age 72, unknown 68.1
2769 Male, age 72, unknown 62.9
1821 Female, age 72, unknown 62.5
2227 Male, age 72, unknown 62.3
2785 Male, age 18, unknown 60.9
2588 Male, age 74, left hemisphere 55.9
1954 Female, age 42, unknown 53.1
2725 Female, age 75, unknown 43.6
2584 Male, age 75, left hemisphere 40.3
Substantia nigra
nTPM: 38.0
2409 Female, age 72, unknown 58.2
2699 Male, age 18, unknown 41.6
2590 Female, age 75, unknown 41.5
2583 Male, age 75, right hemisphere 40.6
1851 Male, age 51, unknown 40.4
2241 Male, age 72, unknown 38.0
1889 Female, age 72, unknown 35.6
1941 Male, age 53, unknown 29.9
2665 Male, age 74, both hemispheres 28.0
1916 Female, age 42, unknown 26.5
Superior colliculus
nTPM: 39.2
1913 Female, age 42, unknown 60.4
1895 Male, age 76, right hemisphere 57.9
1995 Male, age 72, unknown 49.8
2587 Male, age 74, left hemisphere 41.8
1839 Male, age 51, unknown 38.8
2668 Female, age 75, unknown 38.8
1796 Male, age 53, unknown 29.1
2664 Male, age 75, both hemispheres 26.5
2087 Female, age 72, unknown 25.9
2261 Male, age 18, unknown 23.4
Ventral tegmental area
nTPM: 38.7
2223 Female, age 72, unknown 49.4
2410 Female, age 72, unknown 48.9
1942 Male, age 51, unknown 35.2
2021 Male, age 53, unknown 34.4
2218 Male, age 76, both hemispheres 33.2
1915 Female, age 42, unknown 31.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 15.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.7
Samples: 139

Max nTPM: 50.2
Min nTPM: 4.4
Std nTPM: 8.0
Median nTPM: 13.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 50.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 49.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 49.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 40.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 33.7
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 31.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 31.4
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 29.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 27.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 27.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 26.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 166.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 166.8
FF:10158-103A5 76 years, female 166.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 35.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 35.4
Samples: 4

Max nTPM: 62.6
Min nTPM: 21.2
Sample A Female 30.0
Sample B Female 21.2
Sample C Male 27.6
Sample D Male 62.6
Midbrain
nTPM: 32.7
Samples: 4

Max nTPM: 55.8
Min nTPM: 17.7
Sample A Female 55.8
Sample B Female 35.0
Sample C Male 17.7
Sample D Male 22.1
Periaqueductal gray
nTPM: 23.9
Samples: 3

Max nTPM: 28.4
Min nTPM: 16.3
Sample B Female 28.4
Sample C Male 16.3
Sample D Male 27.0
Superior colliculi
nTPM: 25.2
Samples: 4

Max nTPM: 34.2
Min nTPM: 12.4
Sample A Female 26.9
Sample B Female 12.4
Sample C Male 27.4
Sample D Male 34.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 5.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 5.9
Samples: 4

Max nTPM: 6.4
Min nTPM: 5.4
Sample A Male 6.0
Sample B Male 5.4
Sample C Female 6.4
Sample D Female 5.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
70717361 Antisense, RP_050414_03_D05, Mouse strain C57BL/6J (56 days, male) 0.4
74359664 Antisense, RP_060207_01_A04, Mouse strain C57BL/6J (56 days, male) 0.0

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