MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:92.3 nTPM
HPA Brain:73.2 nTPM
GTEx:92.3 nTPM
FANTOM5:47.0 Scaled Tags Per Million
Pig:0.5 nTPM
Mouse:164.0 nTPM
Allen mouse:1.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 73.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 63.0
2019 Male, age 18, unknown 74.6
2411 Female, age 72, unknown 66.2
1827 Male, age 72, unknown 64.3
1833 Male, age 53, unknown 63.0
1870 Female, age 42, unknown 63.0
2219 Male, age 76, both hemispheres 62.2
2586 Male, age 75, left hemisphere 60.7
2666 Male, age 74, left hemisphere 60.5
1830 Male, age 51, unknown 60.0
2828 Female, age 72, unknown 55.3
Dorsal raphe nucleus
nTPM: 66.1
2298 Female, age 72, unknown 67.5
2750 Male, age 76, both hemispheres 67.5
2047 Male, age 72, unknown 67.4
1828 Male, age 53, unknown 66.0
2016 Female, age 72, unknown 62.1
Inferior colliculus
nTPM: 64.5
2097 Female, age 72, unknown 69.8
1890 Male, age 53, unknown 67.3
1848 Female, age 42, unknown 61.7
2849 Male, age 72, unknown 59.2
Median raphe nucleus
nTPM: 68.2
2220 Male, age 76, midline 68.2
Periaquaductal grey, anterior
nTPM: 68.0
1947 Male, age 18, unknown 74.1
2502 Female, age 75, unknown 66.9
1795 Male, age 51, unknown 63.1
Periaquaductal grey, dorsal
nTPM: 62.9
2850 Male, age 76, both hemispheres 65.2
2464 Female, age 72, unknown 64.2
1840 Male, age 53, unknown 61.6
1831 Male, age 72, unknown 60.7
Periaquaductal grey, lateral
nTPM: 61.1
2272 Male, age 74, both hemispheres 63.6
2140 Male, age 76, both hemispheres 60.8
2053 Male, age 18, unknown 58.9
Pretectal area
nTPM: 71.9
1816 Male, age 51, unknown 83.0
2007 Male, age 72, unknown 82.5
1817 Female, age 42, unknown 79.6
1944 Female, age 72, unknown 76.9
1815 Male, age 53, unknown 74.5
2667 Female, age 75, unknown 71.7
2407 Male, age 75, both hemispheres 68.1
2224 Female, age 72, unknown 67.9
2273 Male, age 74, both hemispheres 66.7
2825 Male, age 18, unknown 60.6
2316 Male, age 76, right hemisphere 59.0
Red nucleus
nTPM: 65.0
1821 Female, age 72, unknown 77.7
1865 Male, age 51, unknown 70.2
2725 Female, age 75, unknown 68.1
2785 Male, age 18, unknown 66.2
2823 Male, age 76, right hemisphere 66.1
1904 Male, age 53, unknown 65.6
2584 Male, age 75, left hemisphere 62.8
2769 Male, age 72, unknown 62.4
1954 Female, age 42, unknown 62.0
2588 Male, age 74, left hemisphere 62.0
2503 Female, age 72, unknown 61.0
2227 Male, age 72, unknown 55.9
Substantia nigra
nTPM: 73.2
2241 Male, age 72, unknown 89.8
1916 Female, age 42, unknown 81.3
1889 Female, age 72, unknown 80.4
1851 Male, age 51, unknown 77.6
2409 Female, age 72, unknown 74.2
1941 Male, age 53, unknown 74.0
2590 Female, age 75, unknown 65.1
2583 Male, age 75, right hemisphere 64.4
2665 Male, age 74, both hemispheres 62.9
2699 Male, age 18, unknown 61.8
Superior colliculus
nTPM: 66.1
1895 Male, age 76, right hemisphere 71.7
2261 Male, age 18, unknown 71.4
2668 Female, age 75, unknown 70.9
2087 Female, age 72, unknown 69.3
2587 Male, age 74, left hemisphere 65.8
1913 Female, age 42, unknown 65.7
1796 Male, age 53, unknown 65.5
2664 Male, age 75, both hemispheres 62.2
1995 Male, age 72, unknown 59.9
1839 Male, age 51, unknown 59.0
Ventral tegmental area
nTPM: 65.7
2410 Female, age 72, unknown 71.5
2218 Male, age 76, both hemispheres 68.8
1915 Female, age 42, unknown 67.1
2223 Female, age 72, unknown 65.8
1942 Male, age 51, unknown 61.4
2021 Male, age 53, unknown 59.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 92.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 92.3
Samples: 139

Max nTPM: 158.2
Min nTPM: 51.4
Std nTPM: 18.8
Median nTPM: 90.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 158.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 152.6
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 136.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 135.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 134.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 134.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 133.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 132.0
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 131.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 130.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 125.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 47.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 47.0
FF:10158-103A5 76 years, female 47.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 0.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 0.3
Samples: 4

Max nTPM: 0.5
Min nTPM: 0.1
Sample A Female 0.1
Sample B Female 0.4
Sample C Male 0.5
Sample D Male 0.3
Midbrain
nTPM: 0.5
Samples: 4

Max nTPM: 1.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.3
Sample C Male 1.0
Sample D Male 0.5
Periaqueductal gray
nTPM: 0.5
Samples: 3

Max nTPM: 0.7
Min nTPM: 0.3
Sample B Female 0.4
Sample C Male 0.3
Sample D Male 0.7
Superior colliculi
nTPM: 0.2
Samples: 4

Max nTPM: 0.4
Min nTPM: 0.1
Sample A Female 0.1
Sample B Female 0.4
Sample C Male 0.1
Sample D Male 0.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 164.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 164.0
Samples: 4

Max nTPM: 168.5
Min nTPM: 158.2
Sample A Male 168.5
Sample B Male 165.0
Sample C Female 164.3
Sample D Female 158.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
68744564 Antisense, RP_050208_01_B07, Mouse strain C57BL/6J (56 days, male) 1.0

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