MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.9 nTPM
HPA Brain:45.6 nTPM
GTEx:10.9 nTPM
FANTOM5:113.6 Scaled Tags Per Million
Pig:43.5 nTPM
Mouse:9.1 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 45.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.0
1830 Male, age 51, unknown 48.9
1870 Female, age 42, unknown 48.9
2411 Female, age 72, unknown 48.5
1833 Male, age 53, unknown 45.2
2019 Male, age 18, unknown 41.3
2828 Female, age 72, unknown 29.2
2219 Male, age 76, both hemispheres 27.0
1827 Male, age 72, unknown 26.0
2586 Male, age 75, left hemisphere 23.4
2666 Male, age 74, left hemisphere 21.9
Dorsal raphe nucleus
nTPM: 26.5
2750 Male, age 76, both hemispheres 45.3
2016 Female, age 72, unknown 30.2
1828 Male, age 53, unknown 24.3
2298 Female, age 72, unknown 17.2
2047 Male, age 72, unknown 15.3
Inferior colliculus
nTPM: 23.8
1848 Female, age 42, unknown 25.8
1890 Male, age 53, unknown 24.2
2097 Female, age 72, unknown 23.7
2849 Male, age 72, unknown 21.7
Median raphe nucleus
nTPM: 22.4
2220 Male, age 76, midline 22.4
Periaquaductal grey, anterior
nTPM: 20.6
2502 Female, age 75, unknown 29.0
1947 Male, age 18, unknown 18.2
1795 Male, age 51, unknown 14.7
Periaquaductal grey, dorsal
nTPM: 21.6
2464 Female, age 72, unknown 30.3
1831 Male, age 72, unknown 23.8
2850 Male, age 76, both hemispheres 19.6
1840 Male, age 53, unknown 12.7
Periaquaductal grey, lateral
nTPM: 22.7
2272 Male, age 74, both hemispheres 25.6
2053 Male, age 18, unknown 24.6
2140 Male, age 76, both hemispheres 17.9
Pretectal area
nTPM: 23.9
2316 Male, age 76, right hemisphere 35.9
1815 Male, age 53, unknown 31.7
2273 Male, age 74, both hemispheres 26.3
2825 Male, age 18, unknown 25.4
2007 Male, age 72, unknown 24.7
1817 Female, age 42, unknown 24.4
2407 Male, age 75, both hemispheres 24.0
2667 Female, age 75, unknown 21.7
2224 Female, age 72, unknown 20.4
1944 Female, age 72, unknown 15.7
1816 Male, age 51, unknown 12.8
Red nucleus
nTPM: 45.6
1865 Male, age 51, unknown 60.4
1821 Female, age 72, unknown 55.3
1904 Male, age 53, unknown 54.6
2785 Male, age 18, unknown 49.8
2227 Male, age 72, unknown 49.7
2769 Male, age 72, unknown 49.4
2503 Female, age 72, unknown 48.5
1954 Female, age 42, unknown 47.2
2823 Male, age 76, right hemisphere 38.1
2588 Male, age 74, left hemisphere 34.8
2725 Female, age 75, unknown 32.3
2584 Male, age 75, left hemisphere 26.5
Substantia nigra
nTPM: 25.6
2409 Female, age 72, unknown 35.1
1851 Male, age 51, unknown 30.2
2590 Female, age 75, unknown 29.4
2583 Male, age 75, right hemisphere 28.7
1889 Female, age 72, unknown 28.1
2699 Male, age 18, unknown 25.1
2241 Male, age 72, unknown 23.0
1941 Male, age 53, unknown 22.2
1916 Female, age 42, unknown 18.9
2665 Male, age 74, both hemispheres 15.2
Superior colliculus
nTPM: 29.5
1913 Female, age 42, unknown 49.4
1995 Male, age 72, unknown 45.0
1895 Male, age 76, right hemisphere 33.5
2587 Male, age 74, left hemisphere 33.4
1839 Male, age 51, unknown 31.5
1796 Male, age 53, unknown 23.8
2668 Female, age 75, unknown 23.7
2087 Female, age 72, unknown 19.1
2261 Male, age 18, unknown 18.4
2664 Male, age 75, both hemispheres 17.1
Ventral tegmental area
nTPM: 30.2
2410 Female, age 72, unknown 41.9
2223 Female, age 72, unknown 39.6
2021 Male, age 53, unknown 27.4
1942 Male, age 51, unknown 26.0
2218 Male, age 76, both hemispheres 24.0
1915 Female, age 42, unknown 22.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 10.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.9
Samples: 139

Max nTPM: 32.7
Min nTPM: 3.0
Std nTPM: 6.2
Median nTPM: 9.1
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 32.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 31.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 29.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 27.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 26.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 26.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 25.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 24.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 23.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 22.8
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 22.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 113.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 113.6
FF:10158-103A5 76 years, female 113.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 43.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 38.6
Samples: 4

Max nTPM: 61.7
Min nTPM: 26.1
Sample A Female 32.5
Sample B Female 34.1
Sample C Male 26.1
Sample D Male 61.7
Midbrain
nTPM: 43.5
Samples: 4

Max nTPM: 71.3
Min nTPM: 26.1
Sample A Female 71.3
Sample B Female 47.7
Sample C Male 26.1
Sample D Male 28.7
Periaqueductal gray
nTPM: 28.9
Samples: 3

Max nTPM: 35.8
Min nTPM: 18.0
Sample B Female 35.8
Sample C Male 18.0
Sample D Male 33.0
Superior colliculi
nTPM: 35.6
Samples: 4

Max nTPM: 46.5
Min nTPM: 29.1
Sample A Female 29.1
Sample B Female 30.1
Sample C Male 36.5
Sample D Male 46.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 9.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.1
Samples: 4

Max nTPM: 9.9
Min nTPM: 8.3
Sample A Male 9.5
Sample B Male 8.8
Sample C Female 9.9
Sample D Female 8.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
318 Antisense, RP_Baylor_253898, Mouse strain C57BL/6J (56 days, male) 0.0
319 Antisense, RP_Baylor_253898, Mouse strain C57BL/6J (56 days, male) 0.0

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