MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.9 nTPM
HPA Brain:17.2 nTPM
GTEx:14.9 nTPM
FANTOM5:28.6 Scaled Tags Per Million
Pig:51.1 nTPM
Mouse:30.4 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 17.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 13.5
2019 Male, age 18, unknown 16.6
2411 Female, age 72, unknown 15.4
1870 Female, age 42, unknown 14.2
2219 Male, age 76, both hemispheres 13.1
1830 Male, age 51, unknown 13.0
2586 Male, age 75, left hemisphere 13.0
1827 Male, age 72, unknown 12.5
2828 Female, age 72, unknown 12.4
1833 Male, age 53, unknown 12.2
2666 Male, age 74, left hemisphere 12.1
Dorsal raphe nucleus
nTPM: 17.0
1828 Male, age 53, unknown 18.7
2047 Male, age 72, unknown 18.5
2298 Female, age 72, unknown 16.8
2750 Male, age 76, both hemispheres 16.6
2016 Female, age 72, unknown 14.6
Inferior colliculus
nTPM: 13.0
2097 Female, age 72, unknown 15.1
1890 Male, age 53, unknown 13.3
1848 Female, age 42, unknown 13.0
2849 Male, age 72, unknown 10.9
Median raphe nucleus
nTPM: 17.0
2220 Male, age 76, midline 17.0
Periaquaductal grey, anterior
nTPM: 15.5
2502 Female, age 75, unknown 17.1
1947 Male, age 18, unknown 16.6
1795 Male, age 51, unknown 12.9
Periaquaductal grey, dorsal
nTPM: 13.5
2850 Male, age 76, both hemispheres 14.2
1840 Male, age 53, unknown 14.1
2464 Female, age 72, unknown 13.7
1831 Male, age 72, unknown 12.1
Periaquaductal grey, lateral
nTPM: 12.5
2272 Male, age 74, both hemispheres 13.1
2140 Male, age 76, both hemispheres 13.0
2053 Male, age 18, unknown 11.5
Pretectal area
nTPM: 13.6
2007 Male, age 72, unknown 14.9
1817 Female, age 42, unknown 14.8
2224 Female, age 72, unknown 14.8
2273 Male, age 74, both hemispheres 14.8
1815 Male, age 53, unknown 14.3
1816 Male, age 51, unknown 13.7
1944 Female, age 72, unknown 13.5
2316 Male, age 76, right hemisphere 13.5
2825 Male, age 18, unknown 12.3
2667 Female, age 75, unknown 12.0
2407 Male, age 75, both hemispheres 11.3
Red nucleus
nTPM: 14.8
1821 Female, age 72, unknown 19.1
1954 Female, age 42, unknown 16.5
1865 Male, age 51, unknown 14.7
2227 Male, age 72, unknown 14.6
2785 Male, age 18, unknown 14.6
1904 Male, age 53, unknown 14.4
2503 Female, age 72, unknown 14.4
2769 Male, age 72, unknown 14.1
2725 Female, age 75, unknown 14.0
2588 Male, age 74, left hemisphere 13.8
2823 Male, age 76, right hemisphere 13.8
2584 Male, age 75, left hemisphere 13.2
Substantia nigra
nTPM: 17.2
1916 Female, age 42, unknown 22.3
2241 Male, age 72, unknown 21.2
1851 Male, age 51, unknown 20.1
1941 Male, age 53, unknown 17.7
2699 Male, age 18, unknown 16.4
2409 Female, age 72, unknown 15.9
1889 Female, age 72, unknown 15.6
2590 Female, age 75, unknown 15.4
2665 Male, age 74, both hemispheres 14.7
2583 Male, age 75, right hemisphere 12.2
Superior colliculus
nTPM: 12.7
2668 Female, age 75, unknown 14.9
2587 Male, age 74, left hemisphere 13.6
1839 Male, age 51, unknown 13.2
1913 Female, age 42, unknown 12.7
1995 Male, age 72, unknown 12.6
2087 Female, age 72, unknown 12.6
2664 Male, age 75, both hemispheres 12.4
1796 Male, age 53, unknown 12.0
2261 Male, age 18, unknown 11.9
1895 Male, age 76, right hemisphere 11.4
Ventral tegmental area
nTPM: 16.1
1915 Female, age 42, unknown 17.5
2410 Female, age 72, unknown 17.2
2218 Male, age 76, both hemispheres 16.1
1942 Male, age 51, unknown 15.7
2223 Female, age 72, unknown 15.1
2021 Male, age 53, unknown 14.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 14.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.9
Samples: 139

Max nTPM: 25.1
Min nTPM: 8.5
Std nTPM: 2.8
Median nTPM: 14.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 25.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 22.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 22.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 21.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 21.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 21.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 20.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 20.2
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 19.7
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 19.6
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 19.5
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 28.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 28.6
FF:10158-103A5 76 years, female 28.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 51.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 48.0
Samples: 4

Max nTPM: 57.5
Min nTPM: 38.2
Sample A Female 57.5
Sample B Female 38.2
Sample C Male 41.9
Sample D Male 54.4
Midbrain
nTPM: 51.1
Samples: 4

Max nTPM: 66.6
Min nTPM: 41.2
Sample A Female 66.6
Sample B Female 51.7
Sample C Male 41.2
Sample D Male 44.9
Periaqueductal gray
nTPM: 39.6
Samples: 3

Max nTPM: 42.1
Min nTPM: 37.7
Sample B Female 42.1
Sample C Male 37.7
Sample D Male 39.0
Superior colliculi
nTPM: 49.3
Samples: 4

Max nTPM: 58.2
Min nTPM: 35.3
Sample A Female 58.2
Sample B Female 35.3
Sample C Male 51.8
Sample D Male 52.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 30.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 30.4
Samples: 4

Max nTPM: 31.4
Min nTPM: 29.6
Sample A Male 31.4
Sample B Male 30.4
Sample C Female 30.1
Sample D Female 29.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
68191174 Antisense, RP_041122_02_H07, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org