MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:57.9 nTPM
HPA Brain:282.1 nTPM
GTEx:57.9 nTPM
FANTOM5:35.8 Scaled Tags Per Million
Pig:152.3 nTPM
Mouse:213.4 nTPM
Allen mouse:15.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 282.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 177.1
2586 Male, age 75, left hemisphere 265.6
2666 Male, age 74, left hemisphere 243.4
2219 Male, age 76, both hemispheres 206.4
2019 Male, age 18, unknown 188.2
1827 Male, age 72, unknown 180.9
2828 Female, age 72, unknown 170.3
1870 Female, age 42, unknown 135.5
1833 Male, age 53, unknown 132.2
2411 Female, age 72, unknown 131.8
1830 Male, age 51, unknown 117.0
Dorsal raphe nucleus
nTPM: 176.1
2047 Male, age 72, unknown 210.1
2750 Male, age 76, both hemispheres 200.6
2298 Female, age 72, unknown 179.0
1828 Male, age 53, unknown 174.7
2016 Female, age 72, unknown 115.9
Inferior colliculus
nTPM: 139.7
1890 Male, age 53, unknown 141.7
2097 Female, age 72, unknown 140.2
2849 Male, age 72, unknown 139.8
1848 Female, age 42, unknown 137.1
Median raphe nucleus
nTPM: 282.1
2220 Male, age 76, midline 282.1
Periaquaductal grey, anterior
nTPM: 197.4
1795 Male, age 51, unknown 227.6
1947 Male, age 18, unknown 204.0
2502 Female, age 75, unknown 160.6
Periaquaductal grey, dorsal
nTPM: 139.2
2850 Male, age 76, both hemispheres 148.8
1840 Male, age 53, unknown 146.7
2464 Female, age 72, unknown 132.2
1831 Male, age 72, unknown 128.9
Periaquaductal grey, lateral
nTPM: 130.0
2140 Male, age 76, both hemispheres 140.2
2053 Male, age 18, unknown 132.8
2272 Male, age 74, both hemispheres 117.0
Pretectal area
nTPM: 200.3
1816 Male, age 51, unknown 322.6
1944 Female, age 72, unknown 283.0
2007 Male, age 72, unknown 273.2
1817 Female, age 42, unknown 242.0
1815 Male, age 53, unknown 205.7
2667 Female, age 75, unknown 199.6
2224 Female, age 72, unknown 166.3
2825 Male, age 18, unknown 143.2
2407 Male, age 75, both hemispheres 142.6
2316 Male, age 76, right hemisphere 124.9
2273 Male, age 74, both hemispheres 100.3
Red nucleus
nTPM: 138.1
2584 Male, age 75, left hemisphere 185.3
2785 Male, age 18, unknown 175.9
2725 Female, age 75, unknown 158.7
1821 Female, age 72, unknown 142.0
2503 Female, age 72, unknown 137.0
1954 Female, age 42, unknown 131.1
2823 Male, age 76, right hemisphere 126.5
2227 Male, age 72, unknown 124.3
2588 Male, age 74, left hemisphere 123.1
2769 Male, age 72, unknown 120.5
1865 Male, age 51, unknown 118.7
1904 Male, age 53, unknown 114.1
Substantia nigra
nTPM: 217.2
1916 Female, age 42, unknown 311.1
1941 Male, age 53, unknown 296.9
2665 Male, age 74, both hemispheres 256.5
1851 Male, age 51, unknown 241.8
1889 Female, age 72, unknown 214.4
2583 Male, age 75, right hemisphere 212.9
2241 Male, age 72, unknown 212.8
2699 Male, age 18, unknown 157.7
2409 Female, age 72, unknown 143.3
2590 Female, age 75, unknown 124.3
Superior colliculus
nTPM: 174.6
2668 Female, age 75, unknown 277.6
2087 Female, age 72, unknown 233.9
1796 Male, age 53, unknown 195.9
2261 Male, age 18, unknown 192.5
2664 Male, age 75, both hemispheres 192.0
1895 Male, age 76, right hemisphere 152.8
1839 Male, age 51, unknown 134.0
1913 Female, age 42, unknown 128.9
2587 Male, age 74, left hemisphere 120.6
1995 Male, age 72, unknown 117.6
Ventral tegmental area
nTPM: 196.6
2218 Male, age 76, both hemispheres 268.7
1915 Female, age 42, unknown 217.8
2223 Female, age 72, unknown 184.6
2410 Female, age 72, unknown 181.3
1942 Male, age 51, unknown 175.5
2021 Male, age 53, unknown 151.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 57.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 57.9
Samples: 139

Max nTPM: 232.9
Min nTPM: 13.6
Std nTPM: 37.1
Median nTPM: 48.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 232.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 207.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 167.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 159.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 149.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 134.4
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 129.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 127.7
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 116.6
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 113.6
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 105.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 35.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 35.8
FF:10158-103A5 76 years, female 35.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 152.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 110.2
Samples: 4

Max nTPM: 166.6
Min nTPM: 37.6
Sample A Female 162.2
Sample B Female 74.4
Sample C Male 166.6
Sample D Male 37.6
Midbrain
nTPM: 150.5
Samples: 4

Max nTPM: 323.6
Min nTPM: 52.8
Sample A Female 52.8
Sample B Female 82.9
Sample C Male 323.6
Sample D Male 142.6
Periaqueductal gray
nTPM: 72.6
Samples: 3

Max nTPM: 98.2
Min nTPM: 53.5
Sample B Female 66.2
Sample C Male 98.2
Sample D Male 53.5
Superior colliculi
nTPM: 152.3
Samples: 4

Max nTPM: 263.5
Min nTPM: 82.3
Sample A Female 123.1
Sample B Female 82.3
Sample C Male 263.5
Sample D Male 140.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 213.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 213.5
Samples: 4

Max nTPM: 224.8
Min nTPM: 201.9
Sample A Male 201.9
Sample B Male 216.0
Sample C Female 224.8
Sample D Female 211.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 15.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.2
69817886 Antisense, RP_050510_03_H08, Mouse strain C57BL/6J (56 days, male) 15.2

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