HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:34.6 nTPM
HPA Brain:70.6 nTPM
GTEx:34.6 nTPM
FANTOM5:11.2 Scaled Tags Per Million
Pig:38.3 nTPM
Mouse:82.7 nTPM
Allen mouse:2.4 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 70.6
Sample id Sample description nTPM
Hippocampus
nTPM: 66.5
2529 Female, age 94, left hemisphere 74.4
1911 Female, age 85, right hemisphere 67.7
1855 Male, age 76, left hemisphere 65.4
2148 Female, age 91, left hemisphere 65.1
2621 Female, age 67, right hemisphere 63.9
1898 Male, age 80, left hemisphere 62.7
Dentate gyrus
nTPM: 64.2
2246 Female, age 85, both hemispheres 71.1
2528 Male, age 74, both hemispheres 67.8
2530 Female, age 94, left hemisphere 64.1
2531 Female, age 67, both hemispheres 62.6
1927 Female, age 91, both hemispheres 62.4
2010 Male, age 76, both hemispheres 57.0
Entorhinal gyrus
nTPM: 68.9
1938 Female, age 85, left hemisphere 73.5
2686 Male, age 75, right hemisphere 72.7
2613 Female, age 94, left hemisphere 69.3
1787 Male, age 76, left hemisphere 68.9
2117 Female, age 91, right hemisphere 66.5
2764 Male, age 80, right hemisphere 62.1
Hippocampus, CA1
nTPM: 65.0
2082 Female, age 91, right hemisphere 80.7
2045 Male, age 76, both hemispheres 71.5
2527 Male, age 74, both hemispheres 64.1
1873 Female, age 85, both hemispheres 56.8
2749 Male, age 80, left hemisphere 52.1
Hippocampus, CA2
nTPM: 70.6
1940 Female, age 85, left hemisphere 101.0
2113 Female, age 91, right hemisphere 71.1
2437 Female, age 94, left hemisphere 65.8
1892 Male, age 76, both hemispheres 65.4
2249 Male, age 74, both hemispheres 62.5
1963 Male, age 80, left hemisphere 57.9
Hippocampus, CA3
nTPM: 66.7
2861 Female, age 67, both hemispheres 71.2
1867 Male, age 76, both hemispheres 70.5
1891 Female, age 85, both hemispheres 66.9
2620 Female, age 94, left hemisphere 66.1
2137 Male, age 80, left hemisphere 63.6
2436 Male, age 74, both hemispheres 61.9
Parahippocampal cortex
nTPM: 66.9
1933 Female, age 85, both hemispheres 73.1
2018 Male, age 76, both hemispheres 71.1
2622 Female, age 67, right hemisphere 70.0
2532 Female, age 72, left hemisphere 67.9
2692 Male, age 74, both hemispheres 67.8
2693 Female, age 94, both hemispheres 65.0
1990 Female, age 91, right hemisphere 64.6
2250 Female, age 67, right hemisphere 64.3
2245 Female, age 91, both hemispheres 63.6
1850 Male, age 80, both hemispheres 61.4
Perirhinal gyrus
nTPM: 68.2
1847 Female, age 91, left hemisphere 77.7
1841 Female, age 85, right hemisphere 68.3
2521 Female, age 94, right hemisphere 66.8
2848 Male, age 76, right hemisphere 64.7
1794 Male, age 80, right hemisphere 63.7
Subiculum
nTPM: 63.0
2619 Male, age 74, both hemispheres 70.1
2729 Female, age 91, right hemisphere 69.1
2438 Female, age 94, left hemisphere 63.3
1977 Female, age 85, both hemispheres 62.0
1901 Male, age 80, both hemispheres 59.2
2042 Male, age 76, both hemispheres 54.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 34.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 34.6
Samples: 197

Max nTPM: 63.0
Min nTPM: 20.8
Std nTPM: 6.7
Median nTPM: 34.2
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 63.0
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 56.7
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 53.1
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 52.2
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 52.1
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 51.0
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 49.6
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 48.6
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 48.5
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 48.5
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 48.2
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 11.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 11.2
FF:10153-102I9 76 years, female 14.0
FF:10169-103B7 60 years, female 8.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 38.3
Pig sample Sample description nTPM
Subiculum
nTPM: 37.0
Samples: 4

Max nTPM: 47.9
Min nTPM: 32.9
Sample A Female 47.9
Sample B Female 33.8
Sample C Male 33.3
Sample D Male 32.9
Dorsal hippocampus
nTPM: 26.7
Samples: 4

Max nTPM: 33.4
Min nTPM: 15.0
Sample A Female 29.7
Sample B Female 28.5
Sample C Male 33.4
Sample D Male 15.0
Entorhinal cortex
nTPM: 38.3
Samples: 4

Max nTPM: 48.4
Min nTPM: 34.2
Sample A Female 35.3
Sample B Female 35.2
Sample C Male 48.4
Sample D Male 34.2
Ventral hippocampus
nTPM: 27.5
Samples: 4

Max nTPM: 36.4
Min nTPM: 22.1
Sample A Female 22.1
Sample B Female 23.0
Sample C Male 36.4
Sample D Male 28.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 82.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 82.7
Samples: 4

Max nTPM: 92.8
Min nTPM: 68.5
Sample A Male 79.8
Sample B Male 89.6
Sample C Female 68.5
Sample D Female 92.8
Hippocampal formation
nTPM: 47.6
Samples: 4

Max nTPM: 50.7
Min nTPM: 44.9
Sample A Male 50.7
Sample B Male 46.2
Sample C Female 48.5
Sample D Female 44.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.4
68157389 Antisense, RP_041116_02_C12, Mouse strain C57BL/6J (56 days, male) 2.5
70928373 Antisense, RP_050725_02_D10, Mouse strain C57BL/6J (56 days, male) 2.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org