MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:43.0 nTPM
HPA Brain:113.8 nTPM
GTEx:43.0 nTPM
FANTOM5:7.5 Scaled Tags Per Million
Pig:21.1 nTPM
Mouse:35.9 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 113.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 89.1
2586 Male, age 75, left hemisphere 133.0
2828 Female, age 72, unknown 114.1
1827 Male, age 72, unknown 111.5
2666 Male, age 74, left hemisphere 92.8
2019 Male, age 18, unknown 89.5
1870 Female, age 42, unknown 75.2
2411 Female, age 72, unknown 72.0
1833 Male, age 53, unknown 68.3
1830 Male, age 51, unknown 67.7
2219 Male, age 76, both hemispheres 66.9
Dorsal raphe nucleus
nTPM: 78.7
2298 Female, age 72, unknown 93.1
2047 Male, age 72, unknown 80.9
2016 Female, age 72, unknown 78.1
2750 Male, age 76, both hemispheres 72.6
1828 Male, age 53, unknown 68.7
Inferior colliculus
nTPM: 80.2
1890 Male, age 53, unknown 90.4
2097 Female, age 72, unknown 90.3
1848 Female, age 42, unknown 71.1
2849 Male, age 72, unknown 68.9
Median raphe nucleus
nTPM: 75.8
2220 Male, age 76, midline 75.8
Periaquaductal grey, anterior
nTPM: 99.2
1795 Male, age 51, unknown 122.0
2502 Female, age 75, unknown 104.7
1947 Male, age 18, unknown 70.9
Periaquaductal grey, dorsal
nTPM: 90.2
1831 Male, age 72, unknown 95.3
1840 Male, age 53, unknown 95.0
2850 Male, age 76, both hemispheres 94.8
2464 Female, age 72, unknown 75.7
Periaquaductal grey, lateral
nTPM: 96.1
2053 Male, age 18, unknown 104.5
2140 Male, age 76, both hemispheres 103.9
2272 Male, age 74, both hemispheres 80.0
Pretectal area
nTPM: 113.8
1816 Male, age 51, unknown 184.1
1944 Female, age 72, unknown 158.5
2007 Male, age 72, unknown 129.8
1817 Female, age 42, unknown 128.5
1815 Male, age 53, unknown 128.1
2407 Male, age 75, both hemispheres 99.0
2825 Male, age 18, unknown 97.0
2667 Female, age 75, unknown 90.2
2224 Female, age 72, unknown 84.8
2316 Male, age 76, right hemisphere 80.1
2273 Male, age 74, both hemispheres 72.0
Red nucleus
nTPM: 75.4
2584 Male, age 75, left hemisphere 104.0
2785 Male, age 18, unknown 88.3
2725 Female, age 75, unknown 76.3
2503 Female, age 72, unknown 75.7
2588 Male, age 74, left hemisphere 75.5
1904 Male, age 53, unknown 75.1
1954 Female, age 42, unknown 74.7
1821 Female, age 72, unknown 69.1
1865 Male, age 51, unknown 68.6
2769 Male, age 72, unknown 66.8
2823 Male, age 76, right hemisphere 66.3
2227 Male, age 72, unknown 64.1
Substantia nigra
nTPM: 88.7
2583 Male, age 75, right hemisphere 112.8
1889 Female, age 72, unknown 102.3
2665 Male, age 74, both hemispheres 98.7
2590 Female, age 75, unknown 93.0
1916 Female, age 42, unknown 90.9
1851 Male, age 51, unknown 85.6
2241 Male, age 72, unknown 80.1
2409 Female, age 72, unknown 77.6
1941 Male, age 53, unknown 73.0
2699 Male, age 18, unknown 72.4
Superior colliculus
nTPM: 102.9
2087 Female, age 72, unknown 143.7
2261 Male, age 18, unknown 138.2
2664 Male, age 75, both hemispheres 128.3
1796 Male, age 53, unknown 105.8
1913 Female, age 42, unknown 104.2
2668 Female, age 75, unknown 102.8
1995 Male, age 72, unknown 97.5
2587 Male, age 74, left hemisphere 73.6
1839 Male, age 51, unknown 71.2
1895 Male, age 76, right hemisphere 63.4
Ventral tegmental area
nTPM: 81.1
2021 Male, age 53, unknown 92.7
2218 Male, age 76, both hemispheres 85.4
2410 Female, age 72, unknown 84.5
1915 Female, age 42, unknown 78.7
1942 Male, age 51, unknown 75.4
2223 Female, age 72, unknown 69.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 43.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 43.0
Samples: 139

Max nTPM: 64.5
Min nTPM: 29.0
Std nTPM: 6.9
Median nTPM: 42.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 64.5
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 60.1
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 59.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 58.2
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 58.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 57.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 54.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 54.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 54.4
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 53.8
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 53.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 7.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 7.5
FF:10158-103A5 76 years, female 7.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 21.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 21.2
Samples: 4

Max nTPM: 29.9
Min nTPM: 8.9
Sample A Female 28.0
Sample B Female 17.8
Sample C Male 29.9
Sample D Male 8.9
Midbrain
nTPM: 20.9
Samples: 4

Max nTPM: 32.4
Min nTPM: 14.2
Sample A Female 14.2
Sample B Female 16.2
Sample C Male 32.4
Sample D Male 20.6
Periaqueductal gray
nTPM: 17.4
Samples: 3

Max nTPM: 23.1
Min nTPM: 14.2
Sample B Female 14.2
Sample C Male 23.1
Sample D Male 14.8
Superior colliculi
nTPM: 20.1
Samples: 4

Max nTPM: 22.1
Min nTPM: 19.0
Sample A Female 19.3
Sample B Female 22.1
Sample C Male 19.9
Sample D Male 19.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 35.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 36.0
Samples: 4

Max nTPM: 38.6
Min nTPM: 32.1
Sample A Male 32.1
Sample B Male 36.4
Sample C Female 38.6
Sample D Female 36.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
70928373 Antisense, RP_050725_02_D10, Mouse strain C57BL/6J (56 days, male) 0.3
68157389 Antisense, RP_041116_02_C12, Mouse strain C57BL/6J (56 days, male) 0.2

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