MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:0.0 nTPM
HPA Brain:18.9 nTPM
GTEx:0.0 nTPM
FANTOM5:20.1 Scaled Tags Per Million
Pig:13.4 nTPM
Mouse:7.7 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 18.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.2
2019 Male, age 18, unknown 20.5
2411 Female, age 72, unknown 17.2
2666 Male, age 74, left hemisphere 16.8
1833 Male, age 53, unknown 16.3
2219 Male, age 76, both hemispheres 16.3
1827 Male, age 72, unknown 16.0
1830 Male, age 51, unknown 15.8
1870 Female, age 42, unknown 15.2
2828 Female, age 72, unknown 14.7
2586 Male, age 75, left hemisphere 12.9
Dorsal raphe nucleus
nTPM: 16.1
2750 Male, age 76, both hemispheres 18.5
2047 Male, age 72, unknown 16.6
1828 Male, age 53, unknown 16.4
2298 Female, age 72, unknown 14.8
2016 Female, age 72, unknown 14.4
Inferior colliculus
nTPM: 15.2
2097 Female, age 72, unknown 17.6
1890 Male, age 53, unknown 15.5
1848 Female, age 42, unknown 14.5
2849 Male, age 72, unknown 13.1
Median raphe nucleus
nTPM: 18.5
2220 Male, age 76, midline 18.5
Periaquaductal grey, anterior
nTPM: 15.6
2502 Female, age 75, unknown 16.8
1947 Male, age 18, unknown 16.1
1795 Male, age 51, unknown 14.0
Periaquaductal grey, dorsal
nTPM: 14.8
2464 Female, age 72, unknown 15.8
2850 Male, age 76, both hemispheres 14.7
1840 Male, age 53, unknown 14.4
1831 Male, age 72, unknown 14.3
Periaquaductal grey, lateral
nTPM: 14.0
2272 Male, age 74, both hemispheres 16.1
2140 Male, age 76, both hemispheres 13.4
2053 Male, age 18, unknown 12.5
Pretectal area
nTPM: 17.0
1817 Female, age 42, unknown 20.4
1944 Female, age 72, unknown 20.1
1816 Male, age 51, unknown 19.7
2007 Male, age 72, unknown 19.3
1815 Male, age 53, unknown 18.9
2273 Male, age 74, both hemispheres 16.8
2667 Female, age 75, unknown 16.0
2224 Female, age 72, unknown 14.7
2407 Male, age 75, both hemispheres 14.3
2825 Male, age 18, unknown 13.4
2316 Male, age 76, right hemisphere 13.1
Red nucleus
nTPM: 17.2
1821 Female, age 72, unknown 21.1
1954 Female, age 42, unknown 19.4
2823 Male, age 76, right hemisphere 18.6
1865 Male, age 51, unknown 18.2
2785 Male, age 18, unknown 17.2
2227 Male, age 72, unknown 17.0
2769 Male, age 72, unknown 16.3
2588 Male, age 74, left hemisphere 16.1
2725 Female, age 75, unknown 16.0
1904 Male, age 53, unknown 15.9
2503 Female, age 72, unknown 15.9
2584 Male, age 75, left hemisphere 14.5
Substantia nigra
nTPM: 18.9
1916 Female, age 42, unknown 24.2
2241 Male, age 72, unknown 21.6
1941 Male, age 53, unknown 20.6
1851 Male, age 51, unknown 20.4
1889 Female, age 72, unknown 19.5
2699 Male, age 18, unknown 18.7
2409 Female, age 72, unknown 18.3
2665 Male, age 74, both hemispheres 15.8
2590 Female, age 75, unknown 15.7
2583 Male, age 75, right hemisphere 14.3
Superior colliculus
nTPM: 16.0
2668 Female, age 75, unknown 19.7
2087 Female, age 72, unknown 18.1
2261 Male, age 18, unknown 16.8
1895 Male, age 76, right hemisphere 16.0
2587 Male, age 74, left hemisphere 16.0
1913 Female, age 42, unknown 15.7
1839 Male, age 51, unknown 14.9
1796 Male, age 53, unknown 14.6
1995 Male, age 72, unknown 14.6
2664 Male, age 75, both hemispheres 13.7
Ventral tegmental area
nTPM: 17.9
2218 Male, age 76, both hemispheres 21.0
2410 Female, age 72, unknown 19.7
1915 Female, age 42, unknown 17.7
2223 Female, age 72, unknown 16.8
2021 Male, age 53, unknown 16.1
1942 Male, age 51, unknown 15.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 0.0
GTEx sample id Sample description nTPM
0.00.00.00.00.00.000.050.100.150.200.250.300.350.400.450.50
Brain - Substantia nigra
Average nTPM: 0.0
Samples: 139

Max nTPM: 0.5
Min nTPM: 0.0
Std nTPM: 0.0
Median nTPM: 0.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 0.5
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 0.4
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 0.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 0.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 0.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 0.2
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 0.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 0.2
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 0.1
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 0.1
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 0.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 20.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 20.1
FF:10158-103A5 76 years, female 20.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 13.4
Pig sample Sample description nTPM
13.013.313.812.913.9012345678910111213
 		Substantia nigra
nTPM: 13.4
Samples: 4

Max nTPM: 13.9
Min nTPM: 12.9
Sample A Female 13.7
Sample B Female 12.9
Sample C Male 13.0
Sample D Male 13.9
11.812.413.011.713.3012345678910111213
 		Midbrain
nTPM: 12.4
Samples: 4

Max nTPM: 13.3
Min nTPM: 11.7
Sample A Female 12.9
Sample B Female 13.3
Sample C Male 11.8
Sample D Male 11.7
12.012.412.911.613.4012345678910111213
 		Periaqueductal gray
nTPM: 12.5
Samples: 3

Max nTPM: 13.4
Min nTPM: 11.6
Sample B Female 13.4
Sample C Male 11.6
Sample D Male 12.4
Superior colliculi
nTPM: 13.0
Samples: 4

Max nTPM: 14.9
Min nTPM: 10.1
Sample A Female 10.1
Sample B Female 14.9
Sample C Male 14.9
Sample D Male 12.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 7.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.7
Samples: 4

Max nTPM: 8.0
Min nTPM: 7.2
Sample A Male 8.0
Sample B Male 7.8
Sample C Female 7.2
Sample D Female 7.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
70528145 Antisense, RP_050623_01_H09, Mouse strain C57BL/6J (56 days, male) 0.0

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