MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.5 nTPM
HPA Brain:26.7 nTPM
GTEx:17.5 nTPM
FANTOM5:143.2 Scaled Tags Per Million
Pig:18.3 nTPM
Mouse:47.2 nTPM
Allen mouse:1.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 26.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.4
2019 Male, age 18, unknown 31.2
2411 Female, age 72, unknown 26.3
1830 Male, age 51, unknown 22.9
1870 Female, age 42, unknown 22.7
1827 Male, age 72, unknown 21.8
1833 Male, age 53, unknown 21.4
2586 Male, age 75, left hemisphere 19.7
2666 Male, age 74, left hemisphere 17.5
2219 Male, age 76, both hemispheres 16.2
2828 Female, age 72, unknown 14.1
Dorsal raphe nucleus
nTPM: 22.6
2298 Female, age 72, unknown 25.7
2047 Male, age 72, unknown 24.1
1828 Male, age 53, unknown 24.0
2750 Male, age 76, both hemispheres 20.7
2016 Female, age 72, unknown 18.3
Inferior colliculus
nTPM: 24.9
2097 Female, age 72, unknown 30.8
1848 Female, age 42, unknown 26.1
1890 Male, age 53, unknown 25.2
2849 Male, age 72, unknown 17.5
Median raphe nucleus
nTPM: 22.4
2220 Male, age 76, midline 22.4
Periaquaductal grey, anterior
nTPM: 17.9
2502 Female, age 75, unknown 19.8
1947 Male, age 18, unknown 18.8
1795 Male, age 51, unknown 15.0
Periaquaductal grey, dorsal
nTPM: 22.0
1831 Male, age 72, unknown 23.3
2464 Female, age 72, unknown 22.9
1840 Male, age 53, unknown 22.8
2850 Male, age 76, both hemispheres 18.8
Periaquaductal grey, lateral
nTPM: 20.8
2140 Male, age 76, both hemispheres 23.4
2053 Male, age 18, unknown 19.7
2272 Male, age 74, both hemispheres 19.2
Pretectal area
nTPM: 24.9
2007 Male, age 72, unknown 31.7
1817 Female, age 42, unknown 30.5
2667 Female, age 75, unknown 29.8
1944 Female, age 72, unknown 28.8
1815 Male, age 53, unknown 26.8
2224 Female, age 72, unknown 25.6
1816 Male, age 51, unknown 24.0
2273 Male, age 74, both hemispheres 22.8
2316 Male, age 76, right hemisphere 21.5
2825 Male, age 18, unknown 17.8
2407 Male, age 75, both hemispheres 14.1
Red nucleus
nTPM: 23.5
1821 Female, age 72, unknown 34.0
1904 Male, age 53, unknown 27.9
2823 Male, age 76, right hemisphere 27.4
1954 Female, age 42, unknown 25.9
2785 Male, age 18, unknown 25.4
1865 Male, age 51, unknown 23.6
2503 Female, age 72, unknown 21.6
2227 Male, age 72, unknown 21.5
2769 Male, age 72, unknown 21.3
2725 Female, age 75, unknown 21.1
2584 Male, age 75, left hemisphere 16.6
2588 Male, age 74, left hemisphere 16.0
Substantia nigra
nTPM: 26.7
1916 Female, age 42, unknown 34.1
1889 Female, age 72, unknown 32.1
2409 Female, age 72, unknown 31.2
1851 Male, age 51, unknown 31.1
2241 Male, age 72, unknown 30.6
2699 Male, age 18, unknown 22.6
2583 Male, age 75, right hemisphere 22.2
1941 Male, age 53, unknown 21.8
2665 Male, age 74, both hemispheres 21.7
2590 Female, age 75, unknown 20.0
Superior colliculus
nTPM: 22.6
2087 Female, age 72, unknown 30.7
2587 Male, age 74, left hemisphere 29.0
1895 Male, age 76, right hemisphere 28.0
2668 Female, age 75, unknown 23.1
2261 Male, age 18, unknown 21.1
1839 Male, age 51, unknown 20.9
1796 Male, age 53, unknown 20.4
1995 Male, age 72, unknown 19.6
1913 Female, age 42, unknown 18.2
2664 Male, age 75, both hemispheres 14.8
Ventral tegmental area
nTPM: 25.1
2410 Female, age 72, unknown 35.3
1915 Female, age 42, unknown 29.5
2218 Male, age 76, both hemispheres 25.3
1942 Male, age 51, unknown 23.2
2021 Male, age 53, unknown 20.1
2223 Female, age 72, unknown 17.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 17.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.5
Samples: 139

Max nTPM: 36.5
Min nTPM: 7.7
Std nTPM: 4.9
Median nTPM: 16.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 36.5
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 32.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 31.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 30.4
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 29.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 29.2
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 25.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 24.4
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 24.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 24.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 23.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 143.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 143.2
FF:10158-103A5 76 years, female 143.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 18.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 14.7
Samples: 4

Max nTPM: 19.6
Min nTPM: 9.4
Sample A Female 19.6
Sample B Female 11.3
Sample C Male 18.4
Sample D Male 9.4
Midbrain
nTPM: 17.8
Samples: 4

Max nTPM: 24.1
Min nTPM: 11.2
Sample A Female 11.2
Sample B Female 15.3
Sample C Male 20.6
Sample D Male 24.1
Periaqueductal gray
nTPM: 13.7
Samples: 3

Max nTPM: 14.4
Min nTPM: 13.1
Sample B Female 13.5
Sample C Male 14.4
Sample D Male 13.1
Superior colliculi
nTPM: 18.3
Samples: 4

Max nTPM: 24.1
Min nTPM: 8.4
Sample A Female 20.6
Sample B Female 8.4
Sample C Male 24.1
Sample D Male 20.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 47.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 47.2
Samples: 4

Max nTPM: 49.4
Min nTPM: 44.4
Sample A Male 47.8
Sample B Male 49.4
Sample C Female 47.1
Sample D Female 44.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
71610880 Antisense, RP_050927_02_A10, Mouse strain C57BL/6J (56 days, male) 1.5

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