MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:65.1 nTPM
HPA Brain:34.9 nTPM
GTEx:65.1 nTPM
FANTOM5:67.3 Scaled Tags Per Million
Pig:40.4 nTPM
Mouse:41.5 nTPM
Allen mouse:2.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 34.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.3
1870 Female, age 42, unknown 35.0
2411 Female, age 72, unknown 32.8
2666 Male, age 74, left hemisphere 28.9
1827 Male, age 72, unknown 28.6
2586 Male, age 75, left hemisphere 27.7
1833 Male, age 53, unknown 26.8
2219 Male, age 76, both hemispheres 26.6
2019 Male, age 18, unknown 26.0
1830 Male, age 51, unknown 25.3
2828 Female, age 72, unknown 25.3
Dorsal raphe nucleus
nTPM: 34.9
2016 Female, age 72, unknown 38.9
2298 Female, age 72, unknown 38.6
1828 Male, age 53, unknown 32.9
2750 Male, age 76, both hemispheres 32.2
2047 Male, age 72, unknown 31.6
Inferior colliculus
nTPM: 30.3
2097 Female, age 72, unknown 32.4
1890 Male, age 53, unknown 31.6
2849 Male, age 72, unknown 30.9
1848 Female, age 42, unknown 26.2
Median raphe nucleus
nTPM: 31.4
2220 Male, age 76, midline 31.4
Periaquaductal grey, anterior
nTPM: 28.4
2502 Female, age 75, unknown 29.0
1947 Male, age 18, unknown 28.4
1795 Male, age 51, unknown 27.9
Periaquaductal grey, dorsal
nTPM: 34.0
1840 Male, age 53, unknown 38.9
2850 Male, age 76, both hemispheres 37.1
1831 Male, age 72, unknown 33.2
2464 Female, age 72, unknown 26.7
Periaquaductal grey, lateral
nTPM: 29.6
2140 Male, age 76, both hemispheres 33.4
2053 Male, age 18, unknown 32.3
2272 Male, age 74, both hemispheres 23.3
Pretectal area
nTPM: 29.9
1815 Male, age 53, unknown 34.4
2667 Female, age 75, unknown 34.3
2316 Male, age 76, right hemisphere 34.2
2224 Female, age 72, unknown 33.6
1817 Female, age 42, unknown 30.1
1816 Male, age 51, unknown 29.6
2007 Male, age 72, unknown 28.5
2825 Male, age 18, unknown 28.1
2273 Male, age 74, both hemispheres 27.4
1944 Female, age 72, unknown 27.1
2407 Male, age 75, both hemispheres 22.0
Red nucleus
nTPM: 31.5
1821 Female, age 72, unknown 39.0
1954 Female, age 42, unknown 36.9
1904 Male, age 53, unknown 34.2
2823 Male, age 76, right hemisphere 33.8
2503 Female, age 72, unknown 33.4
1865 Male, age 51, unknown 32.9
2725 Female, age 75, unknown 32.1
2227 Male, age 72, unknown 31.7
2785 Male, age 18, unknown 28.3
2769 Male, age 72, unknown 27.3
2588 Male, age 74, left hemisphere 27.1
2584 Male, age 75, left hemisphere 20.9
Substantia nigra
nTPM: 34.8
1916 Female, age 42, unknown 41.8
1851 Male, age 51, unknown 41.3
2699 Male, age 18, unknown 39.7
2409 Female, age 72, unknown 38.7
2241 Male, age 72, unknown 37.4
2665 Male, age 74, both hemispheres 34.1
1889 Female, age 72, unknown 32.9
1941 Male, age 53, unknown 28.0
2590 Female, age 75, unknown 27.8
2583 Male, age 75, right hemisphere 26.2
Superior colliculus
nTPM: 29.4
2587 Male, age 74, left hemisphere 35.3
1913 Female, age 42, unknown 33.4
1995 Male, age 72, unknown 33.4
2668 Female, age 75, unknown 29.7
2261 Male, age 18, unknown 28.7
1839 Male, age 51, unknown 27.7
1895 Male, age 76, right hemisphere 27.2
1796 Male, age 53, unknown 26.2
2664 Male, age 75, both hemispheres 26.2
2087 Female, age 72, unknown 25.7
Ventral tegmental area
nTPM: 33.7
1915 Female, age 42, unknown 41.5
2223 Female, age 72, unknown 34.2
2021 Male, age 53, unknown 32.8
2218 Male, age 76, both hemispheres 32.0
1942 Male, age 51, unknown 31.6
2410 Female, age 72, unknown 30.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 65.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 65.1
Samples: 139

Max nTPM: 140.5
Min nTPM: 28.4
Std nTPM: 19.3
Median nTPM: 63.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 140.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 126.0
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 120.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 118.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 110.9
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 109.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 109.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 99.6
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 98.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 98.6
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 97.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 67.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 67.3
FF:10158-103A5 76 years, female 67.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 40.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 38.1
Samples: 4

Max nTPM: 47.8
Min nTPM: 30.8
Sample A Female 41.6
Sample B Female 32.3
Sample C Male 30.8
Sample D Male 47.8
Midbrain
nTPM: 40.5
Samples: 4

Max nTPM: 71.8
Min nTPM: 24.4
Sample A Female 71.8
Sample B Female 39.8
Sample C Male 25.8
Sample D Male 24.4
Periaqueductal gray
nTPM: 31.1
Samples: 3

Max nTPM: 34.8
Min nTPM: 27.6
Sample B Female 34.8
Sample C Male 27.6
Sample D Male 30.8
Superior colliculi
nTPM: 31.3
Samples: 4

Max nTPM: 35.3
Min nTPM: 25.0
Sample A Female 35.3
Sample B Female 25.0
Sample C Male 30.7
Sample D Male 34.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 41.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 41.5
Samples: 4

Max nTPM: 45.1
Min nTPM: 39.9
Sample A Male 40.2
Sample B Male 39.9
Sample C Female 45.1
Sample D Female 40.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.6
69113536 Antisense, RP_050316_02_C09, Mouse strain C57BL/6J (56 days, male) 2.6

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