MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.6 nTPM
HPA Brain:25.7 nTPM
GTEx:8.6 nTPM
FANTOM5:21.6 Scaled Tags Per Million
Pig:25.8 nTPM
Mouse:16.6 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 25.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.4
2219 Male, age 76, both hemispheres 27.5
2666 Male, age 74, left hemisphere 24.1
1827 Male, age 72, unknown 23.5
1830 Male, age 51, unknown 23.0
2019 Male, age 18, unknown 22.6
2828 Female, age 72, unknown 22.0
1833 Male, age 53, unknown 21.6
2411 Female, age 72, unknown 21.4
1870 Female, age 42, unknown 20.5
2586 Male, age 75, left hemisphere 18.1
Dorsal raphe nucleus
nTPM: 20.9
2016 Female, age 72, unknown 23.5
1828 Male, age 53, unknown 21.4
2047 Male, age 72, unknown 20.8
2750 Male, age 76, both hemispheres 20.2
2298 Female, age 72, unknown 18.5
Inferior colliculus
nTPM: 23.4
2849 Male, age 72, unknown 24.2
1848 Female, age 42, unknown 23.8
2097 Female, age 72, unknown 23.1
1890 Male, age 53, unknown 22.5
Median raphe nucleus
nTPM: 19.7
2220 Male, age 76, midline 19.7
Periaquaductal grey, anterior
nTPM: 20.1
1947 Male, age 18, unknown 22.0
1795 Male, age 51, unknown 20.0
2502 Female, age 75, unknown 18.2
Periaquaductal grey, dorsal
nTPM: 22.7
1840 Male, age 53, unknown 24.0
2850 Male, age 76, both hemispheres 23.1
2464 Female, age 72, unknown 21.9
1831 Male, age 72, unknown 21.7
Periaquaductal grey, lateral
nTPM: 22.2
2272 Male, age 74, both hemispheres 24.8
2053 Male, age 18, unknown 21.6
2140 Male, age 76, both hemispheres 20.2
Pretectal area
nTPM: 22.5
1817 Female, age 42, unknown 26.3
1944 Female, age 72, unknown 23.5
2007 Male, age 72, unknown 23.5
1816 Male, age 51, unknown 23.4
2667 Female, age 75, unknown 23.2
2273 Male, age 74, both hemispheres 23.1
1815 Male, age 53, unknown 22.7
2407 Male, age 75, both hemispheres 21.7
2224 Female, age 72, unknown 21.4
2316 Male, age 76, right hemisphere 19.7
2825 Male, age 18, unknown 19.1
Red nucleus
nTPM: 21.1
2588 Male, age 74, left hemisphere 25.6
1865 Male, age 51, unknown 24.3
2503 Female, age 72, unknown 23.6
1954 Female, age 42, unknown 22.6
1821 Female, age 72, unknown 22.3
2725 Female, age 75, unknown 21.3
2785 Male, age 18, unknown 20.6
1904 Male, age 53, unknown 19.7
2584 Male, age 75, left hemisphere 19.2
2769 Male, age 72, unknown 19.1
2227 Male, age 72, unknown 18.0
2823 Male, age 76, right hemisphere 17.4
Substantia nigra
nTPM: 25.7
2409 Female, age 72, unknown 33.8
2665 Male, age 74, both hemispheres 29.7
2241 Male, age 72, unknown 29.1
1941 Male, age 53, unknown 27.0
1916 Female, age 42, unknown 25.0
2699 Male, age 18, unknown 23.7
1851 Male, age 51, unknown 23.4
1889 Female, age 72, unknown 22.6
2590 Female, age 75, unknown 22.5
2583 Male, age 75, right hemisphere 20.2
Superior colliculus
nTPM: 22.8
2668 Female, age 75, unknown 26.8
2261 Male, age 18, unknown 26.6
1796 Male, age 53, unknown 23.3
1995 Male, age 72, unknown 23.1
2587 Male, age 74, left hemisphere 23.0
1839 Male, age 51, unknown 22.5
1913 Female, age 42, unknown 22.1
2087 Female, age 72, unknown 22.1
1895 Male, age 76, right hemisphere 21.3
2664 Male, age 75, both hemispheres 16.5
Ventral tegmental area
nTPM: 22.3
2223 Female, age 72, unknown 30.7
2218 Male, age 76, both hemispheres 21.5
1915 Female, age 42, unknown 21.2
2021 Male, age 53, unknown 20.9
2410 Female, age 72, unknown 20.4
1942 Male, age 51, unknown 19.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 8.6
GTEx sample id Sample description nTPM
7.58.39.45.711.90246810121416
Brain - Substantia nigra
Average nTPM: 8.6
Samples: 139

Max nTPM: 16.7
Min nTPM: 5.7
Std nTPM: 1.5
Median nTPM: 8.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 16.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 13.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 12.6
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 11.9
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 11.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 11.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 10.8
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 10.7
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 10.5
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 10.4
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 10.4
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 21.6
FF:10158-103A5 76 years, female 21.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 25.8
Pig sample Sample description nTPM
23.124.226.522.430.8024681012141618202224262830
 		Substantia nigra
nTPM: 25.4
Samples: 4

Max nTPM: 30.8
Min nTPM: 22.4
Sample A Female 22.4
Sample B Female 25.1
Sample C Male 23.3
Sample D Male 30.8
Midbrain
nTPM: 25.7
Samples: 4

Max nTPM: 31.9
Min nTPM: 19.7
Sample A Female 31.9
Sample B Female 26.7
Sample C Male 24.6
Sample D Male 19.7
19.621.022.618.224.2024681012141618202224
 		Periaqueductal gray
nTPM: 21.1
Samples: 3

Max nTPM: 24.2
Min nTPM: 18.2
Sample B Female 24.2
Sample C Male 18.2
Sample D Male 21.0
23.926.027.821.829.40246810121416182022242628
 		Superior colliculi
nTPM: 25.8
Samples: 4

Max nTPM: 29.4
Min nTPM: 21.8
Sample A Female 21.8
Sample B Female 29.4
Sample C Male 27.3
Sample D Male 24.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 16.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 16.6
Samples: 4

Max nTPM: 17.5
Min nTPM: 15.7
Sample A Male 15.7
Sample B Male 17.5
Sample C Female 16.8
Sample D Female 16.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
2713 Antisense, RP_Baylor_103173, Mouse strain C57BL/6J (56 days, male) 0.7
2714 Antisense, RP_Baylor_103173, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org