HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:13.0 nTPM
HPA Brain:49.0 nTPM
GTEx:13.0 nTPM
FANTOM5:19.3 Scaled Tags Per Million
Pig:28.8 nTPM
Mouse:18.5 nTPM
Allen mouse:1.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA018297Antibody HPA024142
Glial cells LowNot detected
Neuronal cells MediumMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 49.0
Sample id Sample description nTPM
Hippocampus
nTPM: 35.8
2529 Female, age 94, left hemisphere 39.3
1911 Female, age 85, right hemisphere 37.8
2621 Female, age 67, right hemisphere 37.8
1898 Male, age 80, left hemisphere 34.2
2148 Female, age 91, left hemisphere 33.1
1855 Male, age 76, left hemisphere 32.3
Dentate gyrus
nTPM: 34.0
2531 Female, age 67, both hemispheres 42.0
2246 Female, age 85, both hemispheres 39.2
1927 Female, age 91, both hemispheres 37.7
2528 Male, age 74, both hemispheres 29.3
2010 Male, age 76, both hemispheres 28.2
2530 Female, age 94, left hemisphere 27.7
Entorhinal gyrus
nTPM: 38.3
2613 Female, age 94, left hemisphere 43.2
1938 Female, age 85, left hemisphere 42.1
2686 Male, age 75, right hemisphere 42.0
1787 Male, age 76, left hemisphere 35.4
2764 Male, age 80, right hemisphere 34.6
2117 Female, age 91, right hemisphere 32.8
Hippocampus, CA1
nTPM: 36.7
2749 Male, age 80, left hemisphere 40.8
2045 Male, age 76, both hemispheres 40.7
2082 Female, age 91, right hemisphere 35.9
2527 Male, age 74, both hemispheres 33.6
1873 Female, age 85, both hemispheres 32.7
Hippocampus, CA2
nTPM: 36.5
1940 Female, age 85, left hemisphere 42.4
2113 Female, age 91, right hemisphere 41.8
1892 Male, age 76, both hemispheres 39.8
2249 Male, age 74, both hemispheres 36.3
1963 Male, age 80, left hemisphere 30.2
2437 Female, age 94, left hemisphere 28.3
Hippocampus, CA3
nTPM: 41.2
2137 Male, age 80, left hemisphere 58.8
2620 Female, age 94, left hemisphere 41.0
1867 Male, age 76, both hemispheres 39.5
2436 Male, age 74, both hemispheres 37.0
2861 Female, age 67, both hemispheres 35.7
1891 Female, age 85, both hemispheres 34.9
Parahippocampal cortex
nTPM: 40.3
2245 Female, age 91, both hemispheres 49.4
1850 Male, age 80, both hemispheres 46.9
2693 Female, age 94, both hemispheres 43.0
1933 Female, age 85, both hemispheres 41.9
2532 Female, age 72, left hemisphere 41.6
2018 Male, age 76, both hemispheres 41.5
2250 Female, age 67, right hemisphere 39.5
2622 Female, age 67, right hemisphere 35.1
1990 Female, age 91, right hemisphere 32.1
2692 Male, age 74, both hemispheres 31.9
Perirhinal gyrus
nTPM: 49.0
1841 Female, age 85, right hemisphere 54.8
1847 Female, age 91, left hemisphere 52.5
2521 Female, age 94, right hemisphere 47.0
1794 Male, age 80, right hemisphere 46.0
2848 Male, age 76, right hemisphere 44.7
Subiculum
nTPM: 36.0
2438 Female, age 94, left hemisphere 42.2
1901 Male, age 80, both hemispheres 41.7
1977 Female, age 85, both hemispheres 40.0
2042 Male, age 76, both hemispheres 34.1
2729 Female, age 91, right hemisphere 29.9
2619 Male, age 74, both hemispheres 28.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 13.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 13.0
Samples: 197

Max nTPM: 30.7
Min nTPM: 6.6
Std nTPM: 3.9
Median nTPM: 12.1
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 30.7
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 26.9
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 24.7
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 23.2
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 22.4
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 21.6
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 21.6
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 21.5
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 21.2
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 20.9
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 20.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 19.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 19.3
FF:10153-102I9 76 years, female 23.0
FF:10169-103B7 60 years, female 15.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 28.8
Pig sample Sample description nTPM
Subiculum
nTPM: 20.0
Samples: 4

Max nTPM: 20.8
Min nTPM: 19.1
Sample A Female 20.5
Sample B Female 19.1
Sample C Male 19.5
Sample D Male 20.8
Dorsal hippocampus
nTPM: 28.8
Samples: 4

Max nTPM: 33.4
Min nTPM: 20.1
Sample A Female 32.1
Sample B Female 29.4
Sample C Male 33.4
Sample D Male 20.1
Entorhinal cortex
nTPM: 24.4
Samples: 4

Max nTPM: 26.6
Min nTPM: 21.3
Sample A Female 24.9
Sample B Female 26.6
Sample C Male 24.8
Sample D Male 21.3
Ventral hippocampus
nTPM: 23.8
Samples: 4

Max nTPM: 40.0
Min nTPM: 14.3
Sample A Female 21.6
Sample B Female 19.4
Sample C Male 14.3
Sample D Male 40.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 18.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 15.7
Samples: 4

Max nTPM: 16.5
Min nTPM: 14.2
Sample A Male 16.5
Sample B Male 15.9
Sample C Female 16.1
Sample D Female 14.2
Hippocampal formation
nTPM: 18.5
Samples: 4

Max nTPM: 20.0
Min nTPM: 16.6
Sample A Male 17.3
Sample B Male 20.0
Sample C Female 20.0
Sample D Female 16.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.6
2713 Antisense, RP_Baylor_103173, Mouse strain C57BL/6J (56 days, male) 1.6
2714 Antisense, RP_Baylor_103173, Mouse strain C57BL/6J (56 days, male) 0.4

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