MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.7 nTPM
HPA Brain:34.6 nTPM
GTEx:7.7 nTPM
FANTOM5:2.3 Scaled Tags Per Million
Pig:52.1 nTPM
Mouse:109.7 nTPM
Allen mouse:9.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 34.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.4
2411 Female, age 72, unknown 29.3
2219 Male, age 76, both hemispheres 27.4
1833 Male, age 53, unknown 21.4
1827 Male, age 72, unknown 20.3
1870 Female, age 42, unknown 18.3
1830 Male, age 51, unknown 15.7
2586 Male, age 75, left hemisphere 12.0
2666 Male, age 74, left hemisphere 11.9
2828 Female, age 72, unknown 11.3
2019 Male, age 18, unknown 6.9
Dorsal raphe nucleus
nTPM: 27.0
2298 Female, age 72, unknown 48.2
2047 Male, age 72, unknown 27.1
2016 Female, age 72, unknown 23.2
2750 Male, age 76, both hemispheres 21.2
1828 Male, age 53, unknown 15.2
Inferior colliculus
nTPM: 21.9
2849 Male, age 72, unknown 25.1
2097 Female, age 72, unknown 23.9
1848 Female, age 42, unknown 19.4
1890 Male, age 53, unknown 19.1
Median raphe nucleus
nTPM: 34.6
2220 Male, age 76, midline 34.6
Periaquaductal grey, anterior
nTPM: 33.7
1947 Male, age 18, unknown 43.4
2502 Female, age 75, unknown 35.0
1795 Male, age 51, unknown 22.7
Periaquaductal grey, dorsal
nTPM: 32.5
1840 Male, age 53, unknown 43.4
1831 Male, age 72, unknown 31.6
2850 Male, age 76, both hemispheres 30.3
2464 Female, age 72, unknown 24.5
Periaquaductal grey, lateral
nTPM: 23.0
2140 Male, age 76, both hemispheres 26.1
2053 Male, age 18, unknown 24.6
2272 Male, age 74, both hemispheres 18.2
Pretectal area
nTPM: 18.9
2273 Male, age 74, both hemispheres 40.7
2224 Female, age 72, unknown 29.7
2825 Male, age 18, unknown 25.4
2316 Male, age 76, right hemisphere 21.7
2407 Male, age 75, both hemispheres 19.3
2667 Female, age 75, unknown 16.7
1816 Male, age 51, unknown 14.5
1817 Female, age 42, unknown 11.7
1815 Male, age 53, unknown 10.5
2007 Male, age 72, unknown 10.3
1944 Female, age 72, unknown 6.9
Red nucleus
nTPM: 16.1
1954 Female, age 42, unknown 25.0
1904 Male, age 53, unknown 24.1
1821 Female, age 72, unknown 23.8
2769 Male, age 72, unknown 19.9
2227 Male, age 72, unknown 18.9
1865 Male, age 51, unknown 16.4
2823 Male, age 76, right hemisphere 15.3
2584 Male, age 75, left hemisphere 13.1
2503 Female, age 72, unknown 12.2
2725 Female, age 75, unknown 11.1
2785 Male, age 18, unknown 7.6
2588 Male, age 74, left hemisphere 5.8
Substantia nigra
nTPM: 22.1
1916 Female, age 42, unknown 38.1
2241 Male, age 72, unknown 32.3
2665 Male, age 74, both hemispheres 26.3
1851 Male, age 51, unknown 25.8
2699 Male, age 18, unknown 23.5
2409 Female, age 72, unknown 21.3
2590 Female, age 75, unknown 19.5
1889 Female, age 72, unknown 14.5
1941 Male, age 53, unknown 13.7
2583 Male, age 75, right hemisphere 5.7
Superior colliculus
nTPM: 18.1
1796 Male, age 53, unknown 27.0
2664 Male, age 75, both hemispheres 26.0
2261 Male, age 18, unknown 25.7
1895 Male, age 76, right hemisphere 24.1
1839 Male, age 51, unknown 23.4
2668 Female, age 75, unknown 20.0
2587 Male, age 74, left hemisphere 16.9
2087 Female, age 72, unknown 6.5
1913 Female, age 42, unknown 6.4
1995 Male, age 72, unknown 5.5
Ventral tegmental area
nTPM: 28.5
2218 Male, age 76, both hemispheres 35.2
2410 Female, age 72, unknown 31.5
2223 Female, age 72, unknown 30.4
1915 Female, age 42, unknown 27.3
2021 Male, age 53, unknown 23.9
1942 Male, age 51, unknown 22.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 7.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 7.7
Samples: 139

Max nTPM: 28.3
Min nTPM: 0.2
Std nTPM: 5.6
Median nTPM: 6.5
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 28.3
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 24.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 23.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 22.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 19.6
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 17.9
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 17.2
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 17.1
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 17.1
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 16.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 16.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 2.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2.3
FF:10158-103A5 76 years, female 2.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 52.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 48.0
Samples: 4

Max nTPM: 61.9
Min nTPM: 33.5
Sample A Female 61.9
Sample B Female 33.5
Sample C Male 59.0
Sample D Male 37.4
Midbrain
nTPM: 49.6
Samples: 4

Max nTPM: 60.2
Min nTPM: 43.7
Sample A Female 46.0
Sample B Female 48.5
Sample C Male 43.7
Sample D Male 60.2
Periaqueductal gray
nTPM: 52.1
Samples: 3

Max nTPM: 55.3
Min nTPM: 50.0
Sample B Female 51.1
Sample C Male 55.3
Sample D Male 50.0
Superior colliculi
nTPM: 40.9
Samples: 4

Max nTPM: 56.8
Min nTPM: 17.4
Sample A Female 56.8
Sample B Female 17.4
Sample C Male 39.0
Sample D Male 50.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 109.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 109.8
Samples: 4

Max nTPM: 111.1
Min nTPM: 108.8
Sample A Male 109.5
Sample B Male 109.6
Sample C Female 111.1
Sample D Female 108.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.1
79591719 Antisense, RP_071218_02_B10, Mouse strain C57BL/6J (56 days, male) 10.0
81790722 Antisense, RP_090820_01_A05, Mouse strain C57BL/6J (56 days, male) 8.1

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