MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:0.5 nTPM
HPA Brain:35.0 nTPM
GTEx:0.5 nTPM
FANTOM5:0.3 Scaled Tags Per Million
Mouse:0.0 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 35.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.2
2828 Female, age 72, unknown 45.3
1827 Male, age 72, unknown 26.6
2666 Male, age 74, left hemisphere 25.4
1870 Female, age 42, unknown 24.0
1830 Male, age 51, unknown 19.1
2411 Female, age 72, unknown 18.6
2219 Male, age 76, both hemispheres 17.2
1833 Male, age 53, unknown 17.0
2586 Male, age 75, left hemisphere 17.0
2019 Male, age 18, unknown 12.0
Dorsal raphe nucleus
nTPM: 20.8
2016 Female, age 72, unknown 24.7
2750 Male, age 76, both hemispheres 22.7
2047 Male, age 72, unknown 20.0
2298 Female, age 72, unknown 18.4
1828 Male, age 53, unknown 18.2
Inferior colliculus
nTPM: 29.2
1890 Male, age 53, unknown 43.8
2097 Female, age 72, unknown 33.8
1848 Female, age 42, unknown 19.6
2849 Male, age 72, unknown 19.6
Median raphe nucleus
nTPM: 31.8
2220 Male, age 76, midline 31.8
Periaquaductal grey, anterior
nTPM: 29.1
2502 Female, age 75, unknown 34.8
1947 Male, age 18, unknown 27.9
1795 Male, age 51, unknown 24.6
Periaquaductal grey, dorsal
nTPM: 28.3
2850 Male, age 76, both hemispheres 39.0
1831 Male, age 72, unknown 29.6
2464 Female, age 72, unknown 23.7
1840 Male, age 53, unknown 21.0
Periaquaductal grey, lateral
nTPM: 35.0
2053 Male, age 18, unknown 45.0
2140 Male, age 76, both hemispheres 40.3
2272 Male, age 74, both hemispheres 19.6
Pretectal area
nTPM: 24.7
2825 Male, age 18, unknown 37.0
1816 Male, age 51, unknown 36.3
2273 Male, age 74, both hemispheres 32.7
2316 Male, age 76, right hemisphere 28.9
2224 Female, age 72, unknown 23.4
2007 Male, age 72, unknown 22.2
1815 Male, age 53, unknown 21.7
1944 Female, age 72, unknown 21.7
2667 Female, age 75, unknown 19.9
2407 Male, age 75, both hemispheres 16.4
1817 Female, age 42, unknown 11.7
Red nucleus
nTPM: 24.6
1954 Female, age 42, unknown 41.1
1865 Male, age 51, unknown 30.2
2588 Male, age 74, left hemisphere 27.8
2227 Male, age 72, unknown 26.9
2769 Male, age 72, unknown 26.8
2823 Male, age 76, right hemisphere 23.5
2503 Female, age 72, unknown 21.8
1904 Male, age 53, unknown 21.5
2584 Male, age 75, left hemisphere 21.3
1821 Female, age 72, unknown 21.2
2725 Female, age 75, unknown 19.8
2785 Male, age 18, unknown 12.9
Substantia nigra
nTPM: 22.7
2590 Female, age 75, unknown 37.1
2583 Male, age 75, right hemisphere 28.6
1941 Male, age 53, unknown 22.4
2409 Female, age 72, unknown 22.2
1889 Female, age 72, unknown 22.0
2665 Male, age 74, both hemispheres 21.0
2241 Male, age 72, unknown 20.4
1916 Female, age 42, unknown 18.3
1851 Male, age 51, unknown 17.8
2699 Male, age 18, unknown 17.5
Superior colliculus
nTPM: 24.0
2261 Male, age 18, unknown 43.2
1913 Female, age 42, unknown 30.5
1796 Male, age 53, unknown 28.5
2087 Female, age 72, unknown 24.4
1995 Male, age 72, unknown 22.0
1895 Male, age 76, right hemisphere 20.1
1839 Male, age 51, unknown 19.6
2587 Male, age 74, left hemisphere 19.0
2664 Male, age 75, both hemispheres 16.6
2668 Female, age 75, unknown 15.9
Ventral tegmental area
nTPM: 22.0
2218 Male, age 76, both hemispheres 29.9
2021 Male, age 53, unknown 23.5
2223 Female, age 72, unknown 20.9
1942 Male, age 51, unknown 20.6
2410 Female, age 72, unknown 18.8
1915 Female, age 42, unknown 18.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 0.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 0.5
Samples: 139

Max nTPM: 3.4
Min nTPM: 0.0
Std nTPM: 0.4
Median nTPM: 0.4
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 3.4
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 1.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 1.8
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 1.7
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 1.6
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 1.2
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 1.2
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 1.1
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 1.1
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 1.0
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 1.0
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 0.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.3
FF:10158-103A5 76 years, female 0.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
73636096 Antisense, RP_050926_02_B03, Mouse strain C57BL/6J (56 days, male) 0.3
70302866 Antisense, RP_050609_01_A08, Mouse strain C57BL/6J (56 days, male) 0.2
74047746 Antisense, RP_051214_01_H02, Mouse strain C57BL/6J (56 days, male) 0.1
75931530 Antisense, RP_060606_01_B05, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org