MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.4 nTPM
HPA Brain:31.3 nTPM
GTEx:20.4 nTPM
FANTOM5:51.6 Scaled Tags Per Million
Pig:25.3 nTPM
Mouse:10.4 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 31.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.6
1830 Male, age 51, unknown 30.4
1833 Male, age 53, unknown 30.3
1870 Female, age 42, unknown 30.2
2411 Female, age 72, unknown 30.0
2019 Male, age 18, unknown 29.5
1827 Male, age 72, unknown 28.2
2219 Male, age 76, both hemispheres 26.1
2828 Female, age 72, unknown 26.0
2666 Male, age 74, left hemisphere 24.8
2586 Male, age 75, left hemisphere 20.8
Dorsal raphe nucleus
nTPM: 27.4
2750 Male, age 76, both hemispheres 30.2
2016 Female, age 72, unknown 29.4
1828 Male, age 53, unknown 28.1
2047 Male, age 72, unknown 25.6
2298 Female, age 72, unknown 23.8
Inferior colliculus
nTPM: 28.5
1890 Male, age 53, unknown 28.8
2097 Female, age 72, unknown 28.8
2849 Male, age 72, unknown 28.2
1848 Female, age 42, unknown 28.0
Median raphe nucleus
nTPM: 24.5
2220 Male, age 76, midline 24.5
Periaquaductal grey, anterior
nTPM: 26.8
1947 Male, age 18, unknown 29.7
2502 Female, age 75, unknown 27.6
1795 Male, age 51, unknown 23.2
Periaquaductal grey, dorsal
nTPM: 27.3
2464 Female, age 72, unknown 28.2
1831 Male, age 72, unknown 27.3
1840 Male, age 53, unknown 26.9
2850 Male, age 76, both hemispheres 26.8
Periaquaductal grey, lateral
nTPM: 27.0
2140 Male, age 76, both hemispheres 28.5
2053 Male, age 18, unknown 27.2
2272 Male, age 74, both hemispheres 25.4
Pretectal area
nTPM: 27.3
1817 Female, age 42, unknown 28.5
2007 Male, age 72, unknown 28.4
1816 Male, age 51, unknown 28.1
2273 Male, age 74, both hemispheres 28.1
2667 Female, age 75, unknown 27.8
1815 Male, age 53, unknown 27.2
2407 Male, age 75, both hemispheres 27.2
2316 Male, age 76, right hemisphere 27.0
2825 Male, age 18, unknown 26.6
2224 Female, age 72, unknown 26.0
1944 Female, age 72, unknown 25.5
Red nucleus
nTPM: 31.3
1821 Female, age 72, unknown 36.1
1954 Female, age 42, unknown 35.0
2823 Male, age 76, right hemisphere 33.5
2503 Female, age 72, unknown 33.4
1904 Male, age 53, unknown 32.4
1865 Male, age 51, unknown 31.6
2769 Male, age 72, unknown 30.4
2227 Male, age 72, unknown 30.2
2725 Female, age 75, unknown 30.2
2588 Male, age 74, left hemisphere 29.4
2785 Male, age 18, unknown 29.4
2584 Male, age 75, left hemisphere 24.3
Substantia nigra
nTPM: 27.4
2409 Female, age 72, unknown 38.0
2699 Male, age 18, unknown 28.8
1889 Female, age 72, unknown 28.1
2590 Female, age 75, unknown 27.1
1851 Male, age 51, unknown 26.5
1916 Female, age 42, unknown 26.1
2241 Male, age 72, unknown 26.0
1941 Male, age 53, unknown 25.7
2583 Male, age 75, right hemisphere 24.6
2665 Male, age 74, both hemispheres 23.2
Superior colliculus
nTPM: 28.1
2587 Male, age 74, left hemisphere 31.4
1995 Male, age 72, unknown 31.0
1839 Male, age 51, unknown 30.5
1913 Female, age 42, unknown 30.5
1895 Male, age 76, right hemisphere 30.1
2668 Female, age 75, unknown 27.4
2664 Male, age 75, both hemispheres 26.8
1796 Male, age 53, unknown 24.9
2087 Female, age 72, unknown 24.2
2261 Male, age 18, unknown 23.8
Ventral tegmental area
nTPM: 27.2
1915 Female, age 42, unknown 29.2
2021 Male, age 53, unknown 27.5
2410 Female, age 72, unknown 27.5
2223 Female, age 72, unknown 27.2
2218 Male, age 76, both hemispheres 26.1
1942 Male, age 51, unknown 25.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 20.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.4
Samples: 139

Max nTPM: 34.3
Min nTPM: 11.7
Std nTPM: 4.7
Median nTPM: 19.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 34.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 31.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 31.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 30.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 30.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 29.2
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 29.1
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 28.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 28.7
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 28.7
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 28.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 51.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 51.6
FF:10158-103A5 76 years, female 51.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 25.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 22.2
Samples: 4

Max nTPM: 25.5
Min nTPM: 19.2
Sample A Female 25.5
Sample B Female 21.1
Sample C Male 23.1
Sample D Male 19.2
Midbrain
nTPM: 24.0
Samples: 4

Max nTPM: 25.2
Min nTPM: 22.4
Sample A Female 24.9
Sample B Female 22.4
Sample C Male 25.2
Sample D Male 23.5
Periaqueductal gray
nTPM: 20.1
Samples: 3

Max nTPM: 21.1
Min nTPM: 19.3
Sample B Female 20.0
Sample C Male 21.1
Sample D Male 19.3
Superior colliculi
nTPM: 25.3
Samples: 4

Max nTPM: 28.0
Min nTPM: 22.9
Sample A Female 26.4
Sample B Female 22.9
Sample C Male 28.0
Sample D Male 24.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 10.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 10.4
Samples: 4

Max nTPM: 11.0
Min nTPM: 10.0
Sample A Male 10.0
Sample B Male 10.4
Sample C Female 10.0
Sample D Female 11.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
1886 Antisense, RP_Baylor_103291, Mouse strain C57BL/6J (56 days, male) 0.1
633675 Antisense, RP_040907_02_A06, Mouse strain C57BL/6J (56 days, male) 0.1

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