HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni
Consensus:25.4 nTPM
HPA Brain:57.6 nTPM
GTEx:25.4 nTPM
FANTOM5:115.4 Scaled Tags Per Million
Pig:60.5 nTPM
Mouse:128.2 nTPM
Allen mouse:8.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA018520Antibody HPA021051Antibody HPA029426
Glial cells Not detectedMediumNot detected
Neuronal cells MediumHighHigh







HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 57.6
Sample id Sample description nTPM
Hippocampus
nTPM: 48.1
1898 Male, age 80, left hemisphere 65.3
1855 Male, age 76, left hemisphere 47.9
2621 Female, age 67, right hemisphere 46.9
2529 Female, age 94, left hemisphere 45.5
1911 Female, age 85, right hemisphere 45.0
2148 Female, age 91, left hemisphere 38.0
Dentate gyrus
nTPM: 46.5
1927 Female, age 91, both hemispheres 63.2
2010 Male, age 76, both hemispheres 58.4
2246 Female, age 85, both hemispheres 44.0
2528 Male, age 74, both hemispheres 42.3
2530 Female, age 94, left hemisphere 35.9
2531 Female, age 67, both hemispheres 35.1
Entorhinal gyrus
nTPM: 39.5
1938 Female, age 85, left hemisphere 51.0
2764 Male, age 80, right hemisphere 46.2
1787 Male, age 76, left hemisphere 43.2
2117 Female, age 91, right hemisphere 37.3
2686 Male, age 75, right hemisphere 31.2
2613 Female, age 94, left hemisphere 28.0
Hippocampus, CA1
nTPM: 56.6
2749 Male, age 80, left hemisphere 85.8
1873 Female, age 85, both hemispheres 61.2
2045 Male, age 76, both hemispheres 49.3
2527 Male, age 74, both hemispheres 47.6
2082 Female, age 91, right hemisphere 39.4
Hippocampus, CA2
nTPM: 51.2
1892 Male, age 76, both hemispheres 70.8
1963 Male, age 80, left hemisphere 59.9
2249 Male, age 74, both hemispheres 54.5
1940 Female, age 85, left hemisphere 44.8
2113 Female, age 91, right hemisphere 38.9
2437 Female, age 94, left hemisphere 38.1
Hippocampus, CA3
nTPM: 49.3
2137 Male, age 80, left hemisphere 63.1
2436 Male, age 74, both hemispheres 58.9
1867 Male, age 76, both hemispheres 58.8
1891 Female, age 85, both hemispheres 45.5
2620 Female, age 94, left hemisphere 35.2
2861 Female, age 67, both hemispheres 34.5
Parahippocampal cortex
nTPM: 45.3
1850 Male, age 80, both hemispheres 59.9
1933 Female, age 85, both hemispheres 52.7
2250 Female, age 67, right hemisphere 51.5
1990 Female, age 91, right hemisphere 49.2
2018 Male, age 76, both hemispheres 48.9
2245 Female, age 91, both hemispheres 46.1
2693 Female, age 94, both hemispheres 41.3
2532 Female, age 72, left hemisphere 40.7
2622 Female, age 67, right hemisphere 33.3
2692 Male, age 74, both hemispheres 29.5
Perirhinal gyrus
nTPM: 57.6
1847 Female, age 91, left hemisphere 70.0
1841 Female, age 85, right hemisphere 62.6
1794 Male, age 80, right hemisphere 60.0
2848 Male, age 76, right hemisphere 48.9
2521 Female, age 94, right hemisphere 46.6
Subiculum
nTPM: 41.9
1901 Male, age 80, both hemispheres 49.6
1977 Female, age 85, both hemispheres 49.2
2042 Male, age 76, both hemispheres 41.8
2438 Female, age 94, left hemisphere 38.3
2729 Female, age 91, right hemisphere 37.8
2619 Male, age 74, both hemispheres 34.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 25.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 25.4
Samples: 197

Max nTPM: 76.5
Min nTPM: 3.4
Std nTPM: 12.8
Median nTPM: 22.5
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 76.5
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 73.0
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 72.1
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 64.6
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 58.9
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 53.9
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 53.8
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 53.0
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 52.6
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 52.4
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 48.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 115.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 115.4
FF:10169-103B7 60 years, female 143.3
FF:10153-102I9 76 years, female 87.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 60.5
Pig sample Sample description nTPM
Subiculum
nTPM: 52.7
Samples: 4

Max nTPM: 59.0
Min nTPM: 48.0
Sample A Female 59.0
Sample B Female 48.7
Sample C Male 48.0
Sample D Male 55.1
Dorsal hippocampus
nTPM: 60.5
Samples: 4

Max nTPM: 70.7
Min nTPM: 53.0
Sample A Female 70.7
Sample B Female 64.8
Sample C Male 53.0
Sample D Male 53.4
Entorhinal cortex
nTPM: 51.1
Samples: 4

Max nTPM: 57.6
Min nTPM: 44.7
Sample A Female 55.7
Sample B Female 57.6
Sample C Male 46.2
Sample D Male 44.7
Ventral hippocampus
nTPM: 53.4
Samples: 4

Max nTPM: 61.5
Min nTPM: 44.0
Sample A Female 60.6
Sample B Female 44.0
Sample C Male 47.5
Sample D Male 61.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 128.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 128.2
Samples: 4

Max nTPM: 139.7
Min nTPM: 122.5
Sample A Male 122.5
Sample B Male 125.1
Sample C Female 125.4
Sample D Female 139.7
Hippocampal formation
nTPM: 125.0
Samples: 4

Max nTPM: 135.1
Min nTPM: 117.0
Sample A Male 135.1
Sample B Male 127.7
Sample C Female 117.0
Sample D Female 120.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 8.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 8.2
2079 Antisense, RP_040407_02_D07, Mouse strain C57BL/6J (56 days, male) 8.2
2080 Antisense, RP_040407_02_D07, Mouse strain C57BL/6J (56 days, male) 1.2

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