MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:3472.9 nTPM
HPA Brain:2053.0 nTPM
GTEx:3472.9 nTPM
FANTOM5:22.8 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 2053.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1787.3
2411 Female, age 72, unknown 2205.5
1870 Female, age 42, unknown 1999.5
2586 Male, age 75, left hemisphere 1976.3
2828 Female, age 72, unknown 1938.6
2666 Male, age 74, left hemisphere 1772.4
1830 Male, age 51, unknown 1719.1
1833 Male, age 53, unknown 1707.2
1827 Male, age 72, unknown 1693.9
2019 Male, age 18, unknown 1687.5
2219 Male, age 76, both hemispheres 1172.9
Dorsal raphe nucleus
nTPM: 1951.8
2016 Female, age 72, unknown 2253.1
2298 Female, age 72, unknown 2228.0
1828 Male, age 53, unknown 1789.8
2750 Male, age 76, both hemispheres 1780.8
2047 Male, age 72, unknown 1707.2
Inferior colliculus
nTPM: 1794.9
2097 Female, age 72, unknown 1942.7
1890 Male, age 53, unknown 1891.8
1848 Female, age 42, unknown 1797.8
2849 Male, age 72, unknown 1547.5
Median raphe nucleus
nTPM: 1568.4
2220 Male, age 76, midline 1568.4
Periaquaductal grey, anterior
nTPM: 2053.0
2502 Female, age 75, unknown 2544.0
1795 Male, age 51, unknown 1869.5
1947 Male, age 18, unknown 1745.4
Periaquaductal grey, dorsal
nTPM: 1901.7
1840 Male, age 53, unknown 2112.7
1831 Male, age 72, unknown 1983.1
2464 Female, age 72, unknown 1946.8
2850 Male, age 76, both hemispheres 1564.2
Periaquaductal grey, lateral
nTPM: 1884.2
2053 Male, age 18, unknown 2163.4
2140 Male, age 76, both hemispheres 1786.3
2272 Male, age 74, both hemispheres 1703.0
Pretectal area
nTPM: 1640.9
2316 Male, age 76, right hemisphere 1964.2
2825 Male, age 18, unknown 1888.9
2407 Male, age 75, both hemispheres 1873.3
2224 Female, age 72, unknown 1868.1
2273 Male, age 74, both hemispheres 1714.9
1815 Male, age 53, unknown 1645.9
2667 Female, age 75, unknown 1566.4
2007 Male, age 72, unknown 1468.3
1817 Female, age 42, unknown 1437.2
1816 Male, age 51, unknown 1349.3
1944 Female, age 72, unknown 1273.4
Red nucleus
nTPM: 2008.4
2503 Female, age 72, unknown 2654.0
1865 Male, age 51, unknown 2247.1
2227 Male, age 72, unknown 2188.9
2769 Male, age 72, unknown 2180.9
1821 Female, age 72, unknown 2121.0
1904 Male, age 53, unknown 2072.3
2584 Male, age 75, left hemisphere 1933.3
2785 Male, age 18, unknown 1810.2
1954 Female, age 42, unknown 1768.3
2588 Male, age 74, left hemisphere 1761.5
2823 Male, age 76, right hemisphere 1694.0
2725 Female, age 75, unknown 1669.5
Substantia nigra
nTPM: 1814.7
1851 Male, age 51, unknown 2176.5
2590 Female, age 75, unknown 2081.0
2665 Male, age 74, both hemispheres 2073.0
2699 Male, age 18, unknown 1964.6
2409 Female, age 72, unknown 1796.3
2583 Male, age 75, right hemisphere 1782.8
2241 Male, age 72, unknown 1762.7
1916 Female, age 42, unknown 1615.0
1941 Male, age 53, unknown 1469.5
1889 Female, age 72, unknown 1425.4
Superior colliculus
nTPM: 1862.2
2587 Male, age 74, left hemisphere 2258.0
1995 Male, age 72, unknown 2241.5
2664 Male, age 75, both hemispheres 2231.8
1913 Female, age 42, unknown 2048.1
1839 Male, age 51, unknown 1844.4
1796 Male, age 53, unknown 1798.5
2261 Male, age 18, unknown 1672.2
2668 Female, age 75, unknown 1562.3
2087 Female, age 72, unknown 1532.3
1895 Male, age 76, right hemisphere 1432.5
Ventral tegmental area
nTPM: 1967.2
2021 Male, age 53, unknown 2195.7
2410 Female, age 72, unknown 2151.6
2223 Female, age 72, unknown 2012.7
1915 Female, age 42, unknown 1937.8
1942 Male, age 51, unknown 1910.3
2218 Male, age 76, both hemispheres 1594.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 3472.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 3472.9
Samples: 139

Max nTPM: 6295.6
Min nTPM: 1248.0
Std nTPM: 1031.5
Median nTPM: 3372.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 6295.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 6092.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 5971.7
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 5898.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 5687.1
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 5473.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 5465.1
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 5419.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 5151.6
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 5040.1
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 4974.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 22.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 22.8
FF:10158-103A5 76 years, female 22.8

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