MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:53.1 nTPM
HPA Brain:113.0 nTPM
GTEx:53.1 nTPM
FANTOM5:37.7 Scaled Tags Per Million
Pig:94.7 nTPM
Mouse:129.8 nTPM
Allen mouse:9.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 113.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 74.5
2219 Male, age 76, both hemispheres 93.7
1827 Male, age 72, unknown 91.0
2586 Male, age 75, left hemisphere 85.6
2411 Female, age 72, unknown 84.2
2666 Male, age 74, left hemisphere 73.4
2828 Female, age 72, unknown 68.9
1870 Female, age 42, unknown 68.3
1833 Male, age 53, unknown 66.7
1830 Male, age 51, unknown 56.4
2019 Male, age 18, unknown 56.4
Dorsal raphe nucleus
nTPM: 90.7
2298 Female, age 72, unknown 117.6
2047 Male, age 72, unknown 100.8
1828 Male, age 53, unknown 88.4
2016 Female, age 72, unknown 75.6
2750 Male, age 76, both hemispheres 71.2
Inferior colliculus
nTPM: 73.6
2097 Female, age 72, unknown 76.3
1848 Female, age 42, unknown 76.2
2849 Male, age 72, unknown 74.5
1890 Male, age 53, unknown 67.6
Median raphe nucleus
nTPM: 91.6
2220 Male, age 76, midline 91.6
Periaquaductal grey, anterior
nTPM: 83.0
1947 Male, age 18, unknown 95.3
1795 Male, age 51, unknown 88.7
2502 Female, age 75, unknown 65.0
Periaquaductal grey, dorsal
nTPM: 72.2
1840 Male, age 53, unknown 90.5
2850 Male, age 76, both hemispheres 72.6
2464 Female, age 72, unknown 63.7
1831 Male, age 72, unknown 62.0
Periaquaductal grey, lateral
nTPM: 73.0
2272 Male, age 74, both hemispheres 85.8
2053 Male, age 18, unknown 69.9
2140 Male, age 76, both hemispheres 63.3
Pretectal area
nTPM: 73.7
1816 Male, age 51, unknown 88.8
2007 Male, age 72, unknown 82.8
2224 Female, age 72, unknown 82.5
2825 Male, age 18, unknown 81.0
2667 Female, age 75, unknown 79.9
1944 Female, age 72, unknown 79.2
1817 Female, age 42, unknown 73.5
2273 Male, age 74, both hemispheres 72.3
1815 Male, age 53, unknown 66.1
2316 Male, age 76, right hemisphere 52.1
2407 Male, age 75, both hemispheres 51.9
Red nucleus
nTPM: 61.2
1821 Female, age 72, unknown 82.0
2725 Female, age 75, unknown 79.3
2588 Male, age 74, left hemisphere 64.4
1954 Female, age 42, unknown 63.7
2584 Male, age 75, left hemisphere 62.8
2503 Female, age 72, unknown 62.5
2769 Male, age 72, unknown 60.0
2227 Male, age 72, unknown 58.2
2785 Male, age 18, unknown 54.1
1904 Male, age 53, unknown 51.2
1865 Male, age 51, unknown 50.7
2823 Male, age 76, right hemisphere 45.7
Substantia nigra
nTPM: 113.0
1916 Female, age 42, unknown 190.7
2241 Male, age 72, unknown 132.4
1851 Male, age 51, unknown 122.5
1941 Male, age 53, unknown 121.8
2409 Female, age 72, unknown 110.3
2665 Male, age 74, both hemispheres 104.4
2699 Male, age 18, unknown 101.5
1889 Female, age 72, unknown 92.1
2590 Female, age 75, unknown 77.7
2583 Male, age 75, right hemisphere 76.7
Superior colliculus
nTPM: 61.7
1796 Male, age 53, unknown 81.2
2261 Male, age 18, unknown 74.1
2668 Female, age 75, unknown 73.1
1839 Male, age 51, unknown 72.0
2087 Female, age 72, unknown 70.9
1895 Male, age 76, right hemisphere 64.3
2587 Male, age 74, left hemisphere 58.9
2664 Male, age 75, both hemispheres 49.7
1995 Male, age 72, unknown 36.3
1913 Female, age 42, unknown 36.2
Ventral tegmental area
nTPM: 94.6
1915 Female, age 42, unknown 123.0
2410 Female, age 72, unknown 113.0
2218 Male, age 76, both hemispheres 104.9
1942 Male, age 51, unknown 79.8
2021 Male, age 53, unknown 75.0
2223 Female, age 72, unknown 71.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 53.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 53.1
Samples: 139

Max nTPM: 147.7
Min nTPM: 11.8
Std nTPM: 26.5
Median nTPM: 46.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 147.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 146.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 131.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 127.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 118.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 102.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 101.1
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 99.6
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 97.7
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 94.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 93.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 37.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 37.7
FF:10158-103A5 76 years, female 37.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 94.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 79.2
Samples: 4

Max nTPM: 97.5
Min nTPM: 55.8
Sample A Female 95.5
Sample B Female 68.0
Sample C Male 97.5
Sample D Male 55.8
Midbrain
nTPM: 84.0
Samples: 4

Max nTPM: 95.8
Min nTPM: 67.6
Sample A Female 77.3
Sample B Female 67.6
Sample C Male 95.4
Sample D Male 95.8
Periaqueductal gray
nTPM: 75.3
Samples: 3

Max nTPM: 92.8
Min nTPM: 65.4
Sample B Female 67.7
Sample C Male 92.8
Sample D Male 65.4
Superior colliculi
nTPM: 94.7
Samples: 4

Max nTPM: 104.6
Min nTPM: 87.4
Sample A Female 92.7
Sample B Female 87.4
Sample C Male 104.6
Sample D Male 94.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 129.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 129.9
Samples: 4

Max nTPM: 134.5
Min nTPM: 123.2
Sample A Male 123.2
Sample B Male 133.3
Sample C Female 134.5
Sample D Female 128.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.3
69735054 Antisense, RP_050503_02_A01, Mouse strain C57BL/6J (56 days, male) 9.3

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