MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:61.3 nTPM
HPA Brain:72.9 nTPM
GTEx:61.3 nTPM
FANTOM5:93.4 Scaled Tags Per Million
Pig:25.6 nTPM
Mouse:5.1 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 72.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 51.7
2666 Male, age 74, left hemisphere 65.4
2586 Male, age 75, left hemisphere 65.1
2828 Female, age 72, unknown 58.3
1827 Male, age 72, unknown 57.1
1870 Female, age 42, unknown 52.5
1833 Male, age 53, unknown 48.0
2411 Female, age 72, unknown 46.8
2019 Male, age 18, unknown 46.4
1830 Male, age 51, unknown 42.5
2219 Male, age 76, both hemispheres 34.6
Dorsal raphe nucleus
nTPM: 66.0
1828 Male, age 53, unknown 72.3
2298 Female, age 72, unknown 68.5
2047 Male, age 72, unknown 68.2
2016 Female, age 72, unknown 62.6
2750 Male, age 76, both hemispheres 58.5
Inferior colliculus
nTPM: 49.7
1848 Female, age 42, unknown 55.8
2097 Female, age 72, unknown 49.5
2849 Male, age 72, unknown 49.1
1890 Male, age 53, unknown 44.5
Median raphe nucleus
nTPM: 72.9
2220 Male, age 76, midline 72.9
Periaquaductal grey, anterior
nTPM: 63.2
1795 Male, age 51, unknown 64.9
1947 Male, age 18, unknown 64.9
2502 Female, age 75, unknown 59.7
Periaquaductal grey, dorsal
nTPM: 61.4
2850 Male, age 76, both hemispheres 74.4
1840 Male, age 53, unknown 59.7
1831 Male, age 72, unknown 57.5
2464 Female, age 72, unknown 54.2
Periaquaductal grey, lateral
nTPM: 61.5
2140 Male, age 76, both hemispheres 66.9
2053 Male, age 18, unknown 62.6
2272 Male, age 74, both hemispheres 55.1
Pretectal area
nTPM: 60.7
1816 Male, age 51, unknown 77.9
1817 Female, age 42, unknown 74.2
1944 Female, age 72, unknown 69.1
2007 Male, age 72, unknown 64.3
1815 Male, age 53, unknown 63.4
2224 Female, age 72, unknown 60.7
2667 Female, age 75, unknown 58.0
2825 Male, age 18, unknown 57.2
2316 Male, age 76, right hemisphere 53.3
2273 Male, age 74, both hemispheres 47.5
2407 Male, age 75, both hemispheres 42.0
Red nucleus
nTPM: 49.1
1821 Female, age 72, unknown 58.4
2503 Female, age 72, unknown 57.9
2725 Female, age 75, unknown 57.5
2823 Male, age 76, right hemisphere 52.8
1954 Female, age 42, unknown 52.2
2769 Male, age 72, unknown 45.8
2588 Male, age 74, left hemisphere 44.7
2785 Male, age 18, unknown 44.6
1904 Male, age 53, unknown 44.5
1865 Male, age 51, unknown 44.4
2227 Male, age 72, unknown 43.3
2584 Male, age 75, left hemisphere 43.2
Substantia nigra
nTPM: 60.5
2699 Male, age 18, unknown 71.0
1916 Female, age 42, unknown 70.8
1851 Male, age 51, unknown 66.0
2665 Male, age 74, both hemispheres 65.5
1889 Female, age 72, unknown 64.0
2241 Male, age 72, unknown 60.6
1941 Male, age 53, unknown 59.0
2590 Female, age 75, unknown 56.1
2583 Male, age 75, right hemisphere 49.3
2409 Female, age 72, unknown 42.9
Superior colliculus
nTPM: 54.9
1796 Male, age 53, unknown 65.9
2087 Female, age 72, unknown 58.5
1913 Female, age 42, unknown 55.9
1995 Male, age 72, unknown 55.6
2261 Male, age 18, unknown 55.0
2668 Female, age 75, unknown 54.1
2587 Male, age 74, left hemisphere 52.6
1839 Male, age 51, unknown 52.5
1895 Male, age 76, right hemisphere 50.7
2664 Male, age 75, both hemispheres 48.7
Ventral tegmental area
nTPM: 60.8
1915 Female, age 42, unknown 65.6
2218 Male, age 76, both hemispheres 64.8
2410 Female, age 72, unknown 63.6
2021 Male, age 53, unknown 57.9
2223 Female, age 72, unknown 56.8
1942 Male, age 51, unknown 56.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 61.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 61.3
Samples: 139

Max nTPM: 130.3
Min nTPM: 28.4
Std nTPM: 18.3
Median nTPM: 59.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 130.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 126.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 119.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 114.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 105.5
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 95.9
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 95.6
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 94.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 94.2
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 93.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 90.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 93.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 93.4
FF:10158-103A5 76 years, female 93.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 25.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 25.6
Samples: 4

Max nTPM: 34.9
Min nTPM: 16.6
Sample A Female 34.9
Sample B Female 23.2
Sample C Male 27.6
Sample D Male 16.6
Midbrain
nTPM: 18.7
Samples: 4

Max nTPM: 21.5
Min nTPM: 17.1
Sample A Female 21.5
Sample B Female 17.3
Sample C Male 18.7
Sample D Male 17.1
Periaqueductal gray
nTPM: 16.2
Samples: 3

Max nTPM: 18.8
Min nTPM: 13.6
Sample B Female 13.6
Sample C Male 18.8
Sample D Male 16.2
Superior colliculi
nTPM: 18.2
Samples: 4

Max nTPM: 21.3
Min nTPM: 14.1
Sample A Female 21.3
Sample B Female 16.5
Sample C Male 14.1
Sample D Male 20.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 5.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 5.1
Samples: 4

Max nTPM: 6.1
Min nTPM: 4.1
Sample A Male 6.1
Sample B Male 5.3
Sample C Female 4.1
Sample D Female 5.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
68269295 Antisense, RP_041129_01_F03, Mouse strain C57BL/6J (56 days, male) 0.0

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