MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:18.9 nTPM
HPA Brain:8.2 nTPM
GTEx:18.9 nTPM
FANTOM5:20.1 Scaled Tags Per Million
Pig:27.0 nTPM
Mouse:21.4 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 8.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 7.5
1827 Male, age 72, unknown 9.1
2019 Male, age 18, unknown 8.6
2828 Female, age 72, unknown 8.0
2411 Female, age 72, unknown 7.8
1870 Female, age 42, unknown 7.7
2219 Male, age 76, both hemispheres 7.6
2666 Male, age 74, left hemisphere 7.2
1833 Male, age 53, unknown 6.9
2586 Male, age 75, left hemisphere 6.5
1830 Male, age 51, unknown 5.8
Dorsal raphe nucleus
nTPM: 7.5
2298 Female, age 72, unknown 8.7
1828 Male, age 53, unknown 8.1
2016 Female, age 72, unknown 7.5
2047 Male, age 72, unknown 7.5
2750 Male, age 76, both hemispheres 5.9
Inferior colliculus
nTPM: 7.8
2097 Female, age 72, unknown 8.6
1890 Male, age 53, unknown 8.0
1848 Female, age 42, unknown 7.4
2849 Male, age 72, unknown 7.3
Median raphe nucleus
nTPM: 6.6
2220 Male, age 76, midline 6.6
Periaquaductal grey, anterior
nTPM: 5.9
1795 Male, age 51, unknown 6.9
2502 Female, age 75, unknown 5.7
1947 Male, age 18, unknown 5.1
Periaquaductal grey, dorsal
nTPM: 6.7
1831 Male, age 72, unknown 7.0
2850 Male, age 76, both hemispheres 6.8
1840 Male, age 53, unknown 6.7
2464 Female, age 72, unknown 6.3
Periaquaductal grey, lateral
nTPM: 6.6
2272 Male, age 74, both hemispheres 8.3
2053 Male, age 18, unknown 6.0
2140 Male, age 76, both hemispheres 5.6
Pretectal area
nTPM: 8.2
1816 Male, age 51, unknown 10.7
2007 Male, age 72, unknown 10.3
1944 Female, age 72, unknown 9.8
1815 Male, age 53, unknown 9.4
1817 Female, age 42, unknown 8.6
2667 Female, age 75, unknown 8.4
2224 Female, age 72, unknown 8.3
2273 Male, age 74, both hemispheres 7.8
2825 Male, age 18, unknown 6.2
2407 Male, age 75, both hemispheres 5.5
2316 Male, age 76, right hemisphere 4.8
Red nucleus
nTPM: 7.9
1821 Female, age 72, unknown 10.0
2503 Female, age 72, unknown 9.2
2785 Male, age 18, unknown 8.7
2823 Male, age 76, right hemisphere 8.5
2725 Female, age 75, unknown 8.3
1954 Female, age 42, unknown 8.0
1865 Male, age 51, unknown 7.5
2769 Male, age 72, unknown 7.5
2227 Male, age 72, unknown 7.2
1904 Male, age 53, unknown 6.9
2588 Male, age 74, left hemisphere 6.8
2584 Male, age 75, left hemisphere 6.1
Substantia nigra
nTPM: 7.5
1916 Female, age 42, unknown 10.5
1941 Male, age 53, unknown 9.0
1889 Female, age 72, unknown 8.4
2699 Male, age 18, unknown 7.6
1851 Male, age 51, unknown 7.5
2583 Male, age 75, right hemisphere 7.5
2590 Female, age 75, unknown 7.4
2665 Male, age 74, both hemispheres 7.3
2241 Male, age 72, unknown 5.9
2409 Female, age 72, unknown 4.3
Superior colliculus
nTPM: 7.1
2087 Female, age 72, unknown 8.7
2261 Male, age 18, unknown 8.5
2587 Male, age 74, left hemisphere 8.1
1895 Male, age 76, right hemisphere 7.3
1913 Female, age 42, unknown 7.2
1796 Male, age 53, unknown 6.6
1995 Male, age 72, unknown 6.5
2668 Female, age 75, unknown 6.4
1839 Male, age 51, unknown 5.8
2664 Male, age 75, both hemispheres 5.5
Ventral tegmental area
nTPM: 7.5
2410 Female, age 72, unknown 9.6
1915 Female, age 42, unknown 8.6
2218 Male, age 76, both hemispheres 7.6
1942 Male, age 51, unknown 7.2
2021 Male, age 53, unknown 5.9
2223 Female, age 72, unknown 5.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 18.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 18.9
Samples: 139

Max nTPM: 31.3
Min nTPM: 11.3
Std nTPM: 3.3
Median nTPM: 19.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 31.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 27.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 25.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 25.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 25.1
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 25.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 24.6
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 24.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 24.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 23.6
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 23.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 20.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 20.1
FF:10158-103A5 76 years, female 20.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 27.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 22.4
Samples: 4

Max nTPM: 23.7
Min nTPM: 18.7
Sample A Female 23.7
Sample B Female 18.7
Sample C Male 23.6
Sample D Male 23.6
Midbrain
nTPM: 22.5
Samples: 4

Max nTPM: 24.9
Min nTPM: 20.7
Sample A Female 22.5
Sample B Female 20.7
Sample C Male 21.8
Sample D Male 24.9
Periaqueductal gray
nTPM: 20.7
Samples: 3

Max nTPM: 22.5
Min nTPM: 17.9
Sample B Female 21.6
Sample C Male 22.5
Sample D Male 17.9
Superior colliculi
nTPM: 27.0
Samples: 4

Max nTPM: 29.1
Min nTPM: 24.3
Sample A Female 29.1
Sample B Female 26.3
Sample C Male 28.4
Sample D Male 24.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 21.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.4
Samples: 4

Max nTPM: 24.4
Min nTPM: 19.7
Sample A Male 19.7
Sample B Male 20.5
Sample C Female 24.4
Sample D Female 20.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
513245 Antisense, RP_040810_01_E01, Mouse strain C57BL/6J (56 days, male) 0.5

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