MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:196.3 nTPM
HPA Brain:207.4 nTPM
GTEx:196.3 nTPM
FANTOM5:397.5 Scaled Tags Per Million
Mouse:847.4 nTPM
Allen mouse:22.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 207.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 157.6
1827 Male, age 72, unknown 192.0
2019 Male, age 18, unknown 181.2
2411 Female, age 72, unknown 178.9
1870 Female, age 42, unknown 174.6
2219 Male, age 76, both hemispheres 164.5
2666 Male, age 74, left hemisphere 154.0
1833 Male, age 53, unknown 140.5
2586 Male, age 75, left hemisphere 139.8
1830 Male, age 51, unknown 133.6
2828 Female, age 72, unknown 116.8
Dorsal raphe nucleus
nTPM: 166.7
2298 Female, age 72, unknown 232.5
2047 Male, age 72, unknown 166.7
1828 Male, age 53, unknown 154.3
2750 Male, age 76, both hemispheres 147.7
2016 Female, age 72, unknown 132.4
Inferior colliculus
nTPM: 203.6
2097 Female, age 72, unknown 247.7
1848 Female, age 42, unknown 190.4
1890 Male, age 53, unknown 189.9
2849 Male, age 72, unknown 186.1
Median raphe nucleus
nTPM: 207.4
2220 Male, age 76, midline 207.4
Periaquaductal grey, anterior
nTPM: 196.4
1947 Male, age 18, unknown 208.9
2502 Female, age 75, unknown 203.6
1795 Male, age 51, unknown 176.8
Periaquaductal grey, dorsal
nTPM: 168.3
1840 Male, age 53, unknown 194.8
2464 Female, age 72, unknown 161.3
1831 Male, age 72, unknown 159.3
2850 Male, age 76, both hemispheres 157.8
Periaquaductal grey, lateral
nTPM: 154.4
2053 Male, age 18, unknown 163.1
2272 Male, age 74, both hemispheres 157.5
2140 Male, age 76, both hemispheres 142.4
Pretectal area
nTPM: 195.3
1816 Male, age 51, unknown 244.3
2007 Male, age 72, unknown 235.3
1817 Female, age 42, unknown 229.4
2224 Female, age 72, unknown 221.3
1944 Female, age 72, unknown 217.7
1815 Male, age 53, unknown 187.7
2667 Female, age 75, unknown 184.3
2825 Male, age 18, unknown 171.2
2273 Male, age 74, both hemispheres 162.1
2316 Male, age 76, right hemisphere 147.5
2407 Male, age 75, both hemispheres 147.1
Red nucleus
nTPM: 156.1
1821 Female, age 72, unknown 225.3
2725 Female, age 75, unknown 180.4
2785 Male, age 18, unknown 167.5
1865 Male, age 51, unknown 160.3
1954 Female, age 42, unknown 156.6
2227 Male, age 72, unknown 146.3
2503 Female, age 72, unknown 145.6
2769 Male, age 72, unknown 144.6
1904 Male, age 53, unknown 143.9
2584 Male, age 75, left hemisphere 141.8
2588 Male, age 74, left hemisphere 132.9
2823 Male, age 76, right hemisphere 127.8
Substantia nigra
nTPM: 170.0
1889 Female, age 72, unknown 219.0
2241 Male, age 72, unknown 197.8
1941 Male, age 53, unknown 195.7
2409 Female, age 72, unknown 176.5
2665 Male, age 74, both hemispheres 173.0
1916 Female, age 42, unknown 169.1
1851 Male, age 51, unknown 162.1
2590 Female, age 75, unknown 152.3
2583 Male, age 75, right hemisphere 141.4
2699 Male, age 18, unknown 112.9
Superior colliculus
nTPM: 166.2
1895 Male, age 76, right hemisphere 200.7
2261 Male, age 18, unknown 191.6
2587 Male, age 74, left hemisphere 189.4
1796 Male, age 53, unknown 187.3
1839 Male, age 51, unknown 173.2
2087 Female, age 72, unknown 168.5
2668 Female, age 75, unknown 154.7
2664 Male, age 75, both hemispheres 142.1
1913 Female, age 42, unknown 138.2
1995 Male, age 72, unknown 116.0
Ventral tegmental area
nTPM: 166.1
2223 Female, age 72, unknown 181.2
2410 Female, age 72, unknown 174.9
1915 Female, age 42, unknown 174.2
2218 Male, age 76, both hemispheres 160.9
1942 Male, age 51, unknown 158.5
2021 Male, age 53, unknown 146.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 196.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 196.3
Samples: 139

Max nTPM: 675.4
Min nTPM: 88.7
Std nTPM: 83.4
Median nTPM: 179.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 675.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 537.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 507.2
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 401.8
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 389.8
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 350.9
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 349.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 319.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 315.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 307.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 305.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 397.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 397.5
FF:10158-103A5 76 years, female 397.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 847.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 847.4
Samples: 4

Max nTPM: 859.7
Min nTPM: 838.5
Sample A Male 844.2
Sample B Male 859.7
Sample C Female 838.5
Sample D Female 847.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 22.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 22.3
71381013 Antisense, RP_050428_02_F12, Mouse strain C57BL/6J (56 days, male) 22.3

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