MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:29.7 nTPM
HPA Brain:99.5 nTPM
GTEx:29.7 nTPM
FANTOM5:0.3 Scaled Tags Per Million
Pig:142.7 nTPM
Mouse:114.1 nTPM
Allen mouse:3.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 99.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.3
2219 Male, age 76, both hemispheres 75.4
1827 Male, age 72, unknown 41.4
2411 Female, age 72, unknown 39.4
1870 Female, age 42, unknown 28.7
1833 Male, age 53, unknown 25.8
1830 Male, age 51, unknown 23.7
2586 Male, age 75, left hemisphere 16.9
2666 Male, age 74, left hemisphere 15.7
2828 Female, age 72, unknown 4.5
2019 Male, age 18, unknown 1.7
Dorsal raphe nucleus
nTPM: 99.5
2047 Male, age 72, unknown 274.1
2298 Female, age 72, unknown 107.5
2750 Male, age 76, both hemispheres 75.1
2016 Female, age 72, unknown 24.3
1828 Male, age 53, unknown 16.8
Inferior colliculus
nTPM: 18.1
2849 Male, age 72, unknown 34.2
1848 Female, age 42, unknown 13.1
1890 Male, age 53, unknown 12.6
2097 Female, age 72, unknown 12.6
Median raphe nucleus
nTPM: 93.6
2220 Male, age 76, midline 93.6
Periaquaductal grey, anterior
nTPM: 13.7
2502 Female, age 75, unknown 23.8
1947 Male, age 18, unknown 9.1
1795 Male, age 51, unknown 8.0
Periaquaductal grey, dorsal
nTPM: 56.3
2464 Female, age 72, unknown 82.9
1840 Male, age 53, unknown 68.0
2850 Male, age 76, both hemispheres 65.8
1831 Male, age 72, unknown 8.5
Periaquaductal grey, lateral
nTPM: 32.1
2140 Male, age 76, both hemispheres 44.1
2053 Male, age 18, unknown 33.5
2272 Male, age 74, both hemispheres 18.7
Pretectal area
nTPM: 36.1
2825 Male, age 18, unknown 177.6
2224 Female, age 72, unknown 146.9
2667 Female, age 75, unknown 26.8
2273 Male, age 74, both hemispheres 11.9
1816 Male, age 51, unknown 11.7
2407 Male, age 75, both hemispheres 7.2
2316 Male, age 76, right hemisphere 5.3
1815 Male, age 53, unknown 4.4
1944 Female, age 72, unknown 2.6
2007 Male, age 72, unknown 1.6
1817 Female, age 42, unknown 0.8
Red nucleus
nTPM: 29.5
2584 Male, age 75, left hemisphere 128.2
1954 Female, age 42, unknown 68.6
2823 Male, age 76, right hemisphere 38.5
1904 Male, age 53, unknown 25.2
2227 Male, age 72, unknown 20.8
2769 Male, age 72, unknown 19.8
2588 Male, age 74, left hemisphere 11.6
1821 Female, age 72, unknown 11.4
1865 Male, age 51, unknown 9.9
2503 Female, age 72, unknown 9.4
2725 Female, age 75, unknown 8.5
2785 Male, age 18, unknown 2.0
Substantia nigra
nTPM: 9.4
2241 Male, age 72, unknown 17.0
1851 Male, age 51, unknown 15.2
2699 Male, age 18, unknown 15.1
1889 Female, age 72, unknown 15.0
2583 Male, age 75, right hemisphere 7.3
2665 Male, age 74, both hemispheres 6.9
2590 Female, age 75, unknown 6.6
1941 Male, age 53, unknown 5.8
1916 Female, age 42, unknown 4.4
2409 Female, age 72, unknown 1.0
Superior colliculus
nTPM: 15.0
1796 Male, age 53, unknown 28.9
2261 Male, age 18, unknown 25.7
1839 Male, age 51, unknown 24.1
2587 Male, age 74, left hemisphere 19.4
1913 Female, age 42, unknown 15.5
2664 Male, age 75, both hemispheres 12.9
2087 Female, age 72, unknown 7.0
2668 Female, age 75, unknown 6.0
1895 Male, age 76, right hemisphere 5.8
1995 Male, age 72, unknown 4.8
Ventral tegmental area
nTPM: 76.6
2218 Male, age 76, both hemispheres 151.7
2021 Male, age 53, unknown 125.9
2223 Female, age 72, unknown 77.6
1915 Female, age 42, unknown 49.1
1942 Male, age 51, unknown 34.2
2410 Female, age 72, unknown 21.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 29.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 29.7
Samples: 139

Max nTPM: 361.5
Min nTPM: 0.0
Std nTPM: 53.5
Median nTPM: 9.5
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 361.5
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 324.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 223.2
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 196.9
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 164.9
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 152.5
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 149.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 111.6
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 108.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 87.8
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 85.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 0.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.3
FF:10158-103A5 76 years, female 0.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 142.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 23.5
Samples: 4

Max nTPM: 34.0
Min nTPM: 10.1
Sample A Female 34.0
Sample B Female 22.0
Sample C Male 27.7
Sample D Male 10.1
Midbrain
nTPM: 85.9
Samples: 4

Max nTPM: 291.4
Min nTPM: 8.3
Sample A Female 8.3
Sample B Female 35.4
Sample C Male 8.5
Sample D Male 291.4
Periaqueductal gray
nTPM: 138.6
Samples: 3

Max nTPM: 206.0
Min nTPM: 85.5
Sample B Female 85.5
Sample C Male 206.0
Sample D Male 124.3
Superior colliculi
nTPM: 142.7
Samples: 4

Max nTPM: 324.0
Min nTPM: 12.1
Sample A Female 324.0
Sample B Female 12.1
Sample C Male 28.1
Sample D Male 206.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 114.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 114.1
Samples: 4

Max nTPM: 129.7
Min nTPM: 94.1
Sample A Male 129.7
Sample B Male 114.3
Sample C Female 94.1
Sample D Female 118.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.0
1001 Antisense, RP_Baylor_103041, Mouse strain C57BL/6J (56 days, male) 3.0
1002 Antisense, RP_Baylor_103041, Mouse strain C57BL/6J (56 days, male) 2.9

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