HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:9.2 nTPM
HPA Brain:18.4 nTPM
GTEx:9.2 nTPM
FANTOM5:30.8 Scaled Tags Per Million
Pig:8.0 nTPM
Mouse:2.8 nTPM
Allen mouse:0.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA056999
Glial cells Not detected
Neuronal cells Not detected



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 18.4
Sample id Sample description nTPM
Hippocampus
nTPM: 18.4
2529 Female, age 94, left hemisphere 25.9
2148 Female, age 91, left hemisphere 18.9
1911 Female, age 85, right hemisphere 18.3
1855 Male, age 76, left hemisphere 17.5
2621 Female, age 67, right hemisphere 16.3
1898 Male, age 80, left hemisphere 13.8
Dentate gyrus
nTPM: 17.0
2528 Male, age 74, both hemispheres 23.9
2530 Female, age 94, left hemisphere 19.9
2531 Female, age 67, both hemispheres 18.1
2246 Female, age 85, both hemispheres 16.8
2010 Male, age 76, both hemispheres 12.4
1927 Female, age 91, both hemispheres 11.2
Entorhinal gyrus
nTPM: 12.9
2686 Male, age 75, right hemisphere 17.8
2117 Female, age 91, right hemisphere 14.7
1787 Male, age 76, left hemisphere 12.1
2613 Female, age 94, left hemisphere 11.7
1938 Female, age 85, left hemisphere 10.9
2764 Male, age 80, right hemisphere 10.2
Hippocampus, CA1
nTPM: 12.9
2527 Male, age 74, both hemispheres 16.9
1873 Female, age 85, both hemispheres 14.8
2082 Female, age 91, right hemisphere 13.8
2045 Male, age 76, both hemispheres 11.5
2749 Male, age 80, left hemisphere 7.3
Hippocampus, CA2
nTPM: 15.7
2113 Female, age 91, right hemisphere 18.5
2249 Male, age 74, both hemispheres 17.7
2437 Female, age 94, left hemisphere 17.4
1940 Female, age 85, left hemisphere 15.3
1963 Male, age 80, left hemisphere 15.2
1892 Male, age 76, both hemispheres 9.9
Hippocampus, CA3
nTPM: 17.6
2861 Female, age 67, both hemispheres 22.4
2436 Male, age 74, both hemispheres 20.8
2620 Female, age 94, left hemisphere 20.7
1891 Female, age 85, both hemispheres 15.8
2137 Male, age 80, left hemisphere 15.4
1867 Male, age 76, both hemispheres 10.3
Parahippocampal cortex
nTPM: 13.8
2692 Male, age 74, both hemispheres 19.6
2622 Female, age 67, right hemisphere 17.3
1990 Female, age 91, right hemisphere 16.0
2245 Female, age 91, both hemispheres 14.9
2532 Female, age 72, left hemisphere 13.7
2250 Female, age 67, right hemisphere 13.4
2018 Male, age 76, both hemispheres 11.5
1850 Male, age 80, both hemispheres 11.3
1933 Female, age 85, both hemispheres 11.3
2693 Female, age 94, both hemispheres 9.6
Perirhinal gyrus
nTPM: 9.9
2521 Female, age 94, right hemisphere 11.4
1841 Female, age 85, right hemisphere 11.1
1847 Female, age 91, left hemisphere 11.1
1794 Male, age 80, right hemisphere 8.5
2848 Male, age 76, right hemisphere 7.5
Subiculum
nTPM: 16.6
2619 Male, age 74, both hemispheres 21.6
2438 Female, age 94, left hemisphere 19.1
2729 Female, age 91, right hemisphere 18.5
2042 Male, age 76, both hemispheres 17.0
1901 Male, age 80, both hemispheres 13.2
1977 Female, age 85, both hemispheres 10.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 9.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 9.2
Samples: 197

Max nTPM: 45.1
Min nTPM: 2.6
Std nTPM: 4.8
Median nTPM: 8.0
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 45.1
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 27.7
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 25.3
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 23.1
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 22.2
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 18.7
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 17.9
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 17.4
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 17.1
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 17.0
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 15.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 30.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 30.8
FF:10153-102I9 76 years, female 31.5
FF:10169-103B7 60 years, female 30.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 8.0
Pig sample Sample description nTPM
Subiculum
nTPM: 7.0
Samples: 4

Max nTPM: 10.3
Min nTPM: 4.1
Sample A Female 5.3
Sample B Female 4.1
Sample C Male 8.2
Sample D Male 10.3
Dorsal hippocampus
nTPM: 5.1
Samples: 4

Max nTPM: 6.8
Min nTPM: 3.9
Sample A Female 3.9
Sample B Female 4.6
Sample C Male 6.8
Sample D Male 5.2
Entorhinal cortex
nTPM: 8.0
Samples: 4

Max nTPM: 10.6
Min nTPM: 5.7
Sample A Female 10.6
Sample B Female 7.2
Sample C Male 8.5
Sample D Male 5.7
Ventral hippocampus
nTPM: 6.9
Samples: 4

Max nTPM: 11.1
Min nTPM: 5.1
Sample A Female 5.1
Sample B Female 5.8
Sample C Male 11.1
Sample D Male 5.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 2.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 2.9
Samples: 4

Max nTPM: 3.0
Min nTPM: 2.7
Sample A Male 2.8
Sample B Male 2.7
Sample C Female 3.0
Sample D Female 2.9
Hippocampal formation
nTPM: 2.8
Samples: 4

Max nTPM: 3.1
Min nTPM: 2.6
Sample A Male 2.6
Sample B Male 2.7
Sample C Female 2.9
Sample D Female 3.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.1
74635298 Antisense, RP_060215_03_F05, Mouse strain C57BL/6J (56 days, male) 0.1

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