MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:6.1 nTPM
HPA Brain:67.2 nTPM
GTEx:6.1 nTPM
FANTOM5:26.3 Scaled Tags Per Million
Pig:48.9 nTPM
Mouse:57.0 nTPM
Allen mouse:2.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 67.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 45.7
2219 Male, age 76, both hemispheres 72.4
2586 Male, age 75, left hemisphere 49.0
1827 Male, age 72, unknown 47.9
1833 Male, age 53, unknown 47.6
1830 Male, age 51, unknown 43.4
2411 Female, age 72, unknown 42.1
2828 Female, age 72, unknown 42.1
1870 Female, age 42, unknown 39.9
2019 Male, age 18, unknown 37.5
2666 Male, age 74, left hemisphere 35.0
Dorsal raphe nucleus
nTPM: 48.4
1828 Male, age 53, unknown 58.9
2047 Male, age 72, unknown 50.0
2016 Female, age 72, unknown 46.6
2298 Female, age 72, unknown 46.1
2750 Male, age 76, both hemispheres 40.5
Inferior colliculus
nTPM: 54.0
2097 Female, age 72, unknown 57.6
1890 Male, age 53, unknown 57.0
2849 Male, age 72, unknown 55.9
1848 Female, age 42, unknown 45.4
Median raphe nucleus
nTPM: 52.5
2220 Male, age 76, midline 52.5
Periaquaductal grey, anterior
nTPM: 41.4
1795 Male, age 51, unknown 45.9
2502 Female, age 75, unknown 44.8
1947 Male, age 18, unknown 33.4
Periaquaductal grey, dorsal
nTPM: 44.4
2850 Male, age 76, both hemispheres 53.4
1840 Male, age 53, unknown 50.7
2464 Female, age 72, unknown 39.3
1831 Male, age 72, unknown 34.4
Periaquaductal grey, lateral
nTPM: 47.7
2272 Male, age 74, both hemispheres 63.7
2053 Male, age 18, unknown 41.5
2140 Male, age 76, both hemispheres 37.9
Pretectal area
nTPM: 44.4
2667 Female, age 75, unknown 57.2
2273 Male, age 74, both hemispheres 55.0
2224 Female, age 72, unknown 48.5
2407 Male, age 75, both hemispheres 48.5
2825 Male, age 18, unknown 46.9
2007 Male, age 72, unknown 42.3
1817 Female, age 42, unknown 42.0
1815 Male, age 53, unknown 39.7
1944 Female, age 72, unknown 37.7
1816 Male, age 51, unknown 35.6
2316 Male, age 76, right hemisphere 35.1
Red nucleus
nTPM: 37.8
1821 Female, age 72, unknown 49.0
2584 Male, age 75, left hemisphere 48.5
2227 Male, age 72, unknown 42.2
2725 Female, age 75, unknown 41.8
2769 Male, age 72, unknown 40.9
2785 Male, age 18, unknown 40.7
1954 Female, age 42, unknown 37.0
2823 Male, age 76, right hemisphere 32.3
1865 Male, age 51, unknown 31.2
1904 Male, age 53, unknown 30.3
2503 Female, age 72, unknown 30.2
2588 Male, age 74, left hemisphere 29.6
Substantia nigra
nTPM: 67.2
2699 Male, age 18, unknown 99.1
1916 Female, age 42, unknown 94.5
1941 Male, age 53, unknown 79.1
2241 Male, age 72, unknown 76.4
1851 Male, age 51, unknown 75.9
2665 Male, age 74, both hemispheres 70.0
2409 Female, age 72, unknown 51.6
1889 Female, age 72, unknown 48.7
2583 Male, age 75, right hemisphere 42.4
2590 Female, age 75, unknown 33.8
Superior colliculus
nTPM: 39.5
1796 Male, age 53, unknown 50.8
2668 Female, age 75, unknown 45.9
2587 Male, age 74, left hemisphere 43.2
1839 Male, age 51, unknown 43.1
1895 Male, age 76, right hemisphere 39.4
2664 Male, age 75, both hemispheres 38.1
1913 Female, age 42, unknown 35.3
2261 Male, age 18, unknown 35.0
2087 Female, age 72, unknown 34.0
1995 Male, age 72, unknown 29.7
Ventral tegmental area
nTPM: 66.2
2218 Male, age 76, both hemispheres 91.7
1915 Female, age 42, unknown 76.0
2223 Female, age 72, unknown 69.7
1942 Male, age 51, unknown 65.1
2410 Female, age 72, unknown 61.7
2021 Male, age 53, unknown 33.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 6.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 6.1
Samples: 139

Max nTPM: 22.7
Min nTPM: 0.0
Std nTPM: 4.9
Median nTPM: 4.8
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 22.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 18.6
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 18.4
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 17.6
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 17.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 16.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 16.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 16.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 14.9
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 14.8
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 14.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 26.3
FF:10158-103A5 76 years, female 26.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 48.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 48.9
Samples: 4

Max nTPM: 67.6
Min nTPM: 30.1
Sample A Female 56.2
Sample B Female 41.8
Sample C Male 67.6
Sample D Male 30.1
Midbrain
nTPM: 40.1
Samples: 4

Max nTPM: 65.7
Min nTPM: 23.4
Sample A Female 36.2
Sample B Female 35.2
Sample C Male 23.4
Sample D Male 65.7
Periaqueductal gray
nTPM: 40.5
Samples: 3

Max nTPM: 51.4
Min nTPM: 33.3
Sample B Female 33.3
Sample C Male 51.4
Sample D Male 36.8
Superior colliculi
nTPM: 39.0
Samples: 4

Max nTPM: 62.2
Min nTPM: 23.5
Sample A Female 62.2
Sample B Female 31.5
Sample C Male 23.5
Sample D Male 38.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 57.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 57.0
Samples: 4

Max nTPM: 59.8
Min nTPM: 53.7
Sample A Male 57.0
Sample B Male 53.7
Sample C Female 57.5
Sample D Female 59.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.0
74635614 Antisense, RP_060215_04_B01, Mouse strain C57BL/6J (56 days, male) 2.0

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