MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2.5 nTPM
HPA Brain:12.3 nTPM
GTEx:2.5 nTPM
FANTOM5:28.4 Scaled Tags Per Million
Pig:11.9 nTPM
Mouse:3.9 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 12.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 10.1
2219 Male, age 76, both hemispheres 11.5
1833 Male, age 53, unknown 11.3
2411 Female, age 72, unknown 11.0
1830 Male, age 51, unknown 10.8
1827 Male, age 72, unknown 10.7
1870 Female, age 42, unknown 10.3
2828 Female, age 72, unknown 10.3
2019 Male, age 18, unknown 9.8
2586 Male, age 75, left hemisphere 8.2
2666 Male, age 74, left hemisphere 6.9
Dorsal raphe nucleus
nTPM: 11.5
2016 Female, age 72, unknown 12.9
1828 Male, age 53, unknown 11.9
2298 Female, age 72, unknown 11.8
2047 Male, age 72, unknown 10.8
2750 Male, age 76, both hemispheres 10.1
Inferior colliculus
nTPM: 12.2
1848 Female, age 42, unknown 12.8
2849 Male, age 72, unknown 12.8
2097 Female, age 72, unknown 12.1
1890 Male, age 53, unknown 11.1
Median raphe nucleus
nTPM: 10.0
2220 Male, age 76, midline 10.0
Periaquaductal grey, anterior
nTPM: 9.7
1947 Male, age 18, unknown 11.1
2502 Female, age 75, unknown 9.3
1795 Male, age 51, unknown 8.8
Periaquaductal grey, dorsal
nTPM: 12.3
2850 Male, age 76, both hemispheres 13.3
1840 Male, age 53, unknown 12.6
2464 Female, age 72, unknown 12.6
1831 Male, age 72, unknown 10.5
Periaquaductal grey, lateral
nTPM: 12.2
2140 Male, age 76, both hemispheres 12.7
2272 Male, age 74, both hemispheres 12.3
2053 Male, age 18, unknown 11.6
Pretectal area
nTPM: 10.6
2273 Male, age 74, both hemispheres 15.8
2825 Male, age 18, unknown 11.7
2224 Female, age 72, unknown 11.5
2667 Female, age 75, unknown 10.9
1944 Female, age 72, unknown 10.5
2316 Male, age 76, right hemisphere 9.9
1817 Female, age 42, unknown 9.8
1815 Male, age 53, unknown 9.5
1816 Male, age 51, unknown 9.3
2007 Male, age 72, unknown 9.0
2407 Male, age 75, both hemispheres 8.7
Red nucleus
nTPM: 10.2
2503 Female, age 72, unknown 11.9
1821 Female, age 72, unknown 11.7
1954 Female, age 42, unknown 11.4
2823 Male, age 76, right hemisphere 10.8
2769 Male, age 72, unknown 10.5
2725 Female, age 75, unknown 10.1
2227 Male, age 72, unknown 10.0
1865 Male, age 51, unknown 9.9
1904 Male, age 53, unknown 9.8
2588 Male, age 74, left hemisphere 9.5
2785 Male, age 18, unknown 9.5
2584 Male, age 75, left hemisphere 7.6
Substantia nigra
nTPM: 10.0
2590 Female, age 75, unknown 12.5
2241 Male, age 72, unknown 11.9
1941 Male, age 53, unknown 10.5
1851 Male, age 51, unknown 10.4
2699 Male, age 18, unknown 10.2
1916 Female, age 42, unknown 9.9
2583 Male, age 75, right hemisphere 9.9
1889 Female, age 72, unknown 9.5
2665 Male, age 74, both hemispheres 8.4
2409 Female, age 72, unknown 7.1
Superior colliculus
nTPM: 10.4
1839 Male, age 51, unknown 12.0
1895 Male, age 76, right hemisphere 11.9
2587 Male, age 74, left hemisphere 11.8
1995 Male, age 72, unknown 10.8
1913 Female, age 42, unknown 10.7
1796 Male, age 53, unknown 10.3
2664 Male, age 75, both hemispheres 9.7
2087 Female, age 72, unknown 9.3
2261 Male, age 18, unknown 9.0
2668 Female, age 75, unknown 8.2
Ventral tegmental area
nTPM: 10.0
2410 Female, age 72, unknown 11.0
1915 Female, age 42, unknown 10.1
2218 Male, age 76, both hemispheres 9.9
2021 Male, age 53, unknown 9.8
1942 Male, age 51, unknown 9.7
2223 Female, age 72, unknown 9.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 2.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2.5
Samples: 139

Max nTPM: 5.0
Min nTPM: 0.2
Std nTPM: 0.9
Median nTPM: 2.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 5.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 4.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 4.8
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 4.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 4.3
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 4.1
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 4.1
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 4.1
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 3.9
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 3.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 3.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 28.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 28.4
FF:10158-103A5 76 years, female 28.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 11.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 9.8
Samples: 4

Max nTPM: 10.6
Min nTPM: 7.9
Sample A Female 7.9
Sample B Female 10.2
Sample C Male 10.5
Sample D Male 10.6
Midbrain
nTPM: 10.4
Samples: 4

Max nTPM: 11.7
Min nTPM: 7.4
Sample A Female 7.4
Sample B Female 11.6
Sample C Male 11.0
Sample D Male 11.7
Periaqueductal gray
nTPM: 11.9
Samples: 3

Max nTPM: 12.1
Min nTPM: 11.6
Sample B Female 12.1
Sample C Male 11.6
Sample D Male 12.1
Superior colliculi
nTPM: 9.8
Samples: 4

Max nTPM: 10.8
Min nTPM: 8.0
Sample A Female 8.0
Sample B Female 10.0
Sample C Male 10.4
Sample D Male 10.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 3.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.9
Samples: 4

Max nTPM: 4.5
Min nTPM: 3.3
Sample A Male 3.9
Sample B Male 3.3
Sample C Female 3.8
Sample D Female 4.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
69447960 Antisense, RP_050419_02_D08, Mouse strain C57BL/6J (56 days, male) 0.1

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