HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni
Consensus:12.9 nTPM
HPA Brain:38.7 nTPM
GTEx:12.9 nTPM
FANTOM5:47.8 Scaled Tags Per Million
Pig:58.8 nTPM
Mouse:128.9 nTPM
Allen mouse:12.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA001847
Glial cells Medium
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 38.7
Sample id Sample description nTPM
Hippocampus
nTPM: 24.0
1898 Male, age 80, left hemisphere 30.5
2621 Female, age 67, right hemisphere 26.7
2148 Female, age 91, left hemisphere 24.3
1855 Male, age 76, left hemisphere 24.1
1911 Female, age 85, right hemisphere 19.3
2529 Female, age 94, left hemisphere 18.9
Dentate gyrus
nTPM: 27.6
2531 Female, age 67, both hemispheres 37.6
1927 Female, age 91, both hemispheres 35.1
2530 Female, age 94, left hemisphere 27.2
2010 Male, age 76, both hemispheres 25.8
2246 Female, age 85, both hemispheres 20.7
2528 Male, age 74, both hemispheres 19.3
Entorhinal gyrus
nTPM: 27.0
1787 Male, age 76, left hemisphere 37.2
2764 Male, age 80, right hemisphere 33.4
1938 Female, age 85, left hemisphere 29.4
2613 Female, age 94, left hemisphere 25.1
2686 Male, age 75, right hemisphere 19.9
2117 Female, age 91, right hemisphere 17.0
Hippocampus, CA1
nTPM: 27.7
2749 Male, age 80, left hemisphere 50.1
1873 Female, age 85, both hemispheres 29.2
2045 Male, age 76, both hemispheres 27.2
2527 Male, age 74, both hemispheres 18.6
2082 Female, age 91, right hemisphere 13.6
Hippocampus, CA2
nTPM: 28.2
1892 Male, age 76, both hemispheres 49.5
2437 Female, age 94, left hemisphere 36.1
1963 Male, age 80, left hemisphere 28.8
2249 Male, age 74, both hemispheres 19.7
2113 Female, age 91, right hemisphere 18.0
1940 Female, age 85, left hemisphere 16.8
Hippocampus, CA3
nTPM: 28.9
1867 Male, age 76, both hemispheres 36.8
2137 Male, age 80, left hemisphere 31.3
2620 Female, age 94, left hemisphere 30.9
2861 Female, age 67, both hemispheres 30.7
1891 Female, age 85, both hemispheres 24.2
2436 Male, age 74, both hemispheres 19.4
Parahippocampal cortex
nTPM: 30.0
1850 Male, age 80, both hemispheres 38.7
2532 Female, age 72, left hemisphere 35.9
2693 Female, age 94, both hemispheres 32.8
2018 Male, age 76, both hemispheres 31.9
2245 Female, age 91, both hemispheres 30.1
2622 Female, age 67, right hemisphere 30.1
1933 Female, age 85, both hemispheres 29.1
1990 Female, age 91, right hemisphere 28.1
2250 Female, age 67, right hemisphere 27.9
2692 Male, age 74, both hemispheres 15.7
Perirhinal gyrus
nTPM: 38.7
2848 Male, age 76, right hemisphere 48.1
1794 Male, age 80, right hemisphere 40.8
1841 Female, age 85, right hemisphere 39.1
1847 Female, age 91, left hemisphere 34.3
2521 Female, age 94, right hemisphere 31.3
Subiculum
nTPM: 26.4
2438 Female, age 94, left hemisphere 39.1
1901 Male, age 80, both hemispheres 31.8
1977 Female, age 85, both hemispheres 31.2
2042 Male, age 76, both hemispheres 24.5
2619 Male, age 74, both hemispheres 17.9
2729 Female, age 91, right hemisphere 13.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 12.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 12.9
Samples: 197

Max nTPM: 35.5
Min nTPM: 1.9
Std nTPM: 7.4
Median nTPM: 11.2
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 35.5
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 33.9
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 33.1
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 31.0
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 30.8
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 29.8
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 29.7
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 29.4
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 28.6
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 28.5
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 28.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 47.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 47.8
FF:10169-103B7 60 years, female 56.0
FF:10153-102I9 76 years, female 39.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 58.8
Pig sample Sample description nTPM
Subiculum
nTPM: 58.8
Samples: 4

Max nTPM: 81.3
Min nTPM: 44.7
Sample A Female 81.3
Sample B Female 51.1
Sample C Male 57.9
Sample D Male 44.7
Dorsal hippocampus
nTPM: 45.8
Samples: 4

Max nTPM: 52.2
Min nTPM: 41.8
Sample A Female 52.2
Sample B Female 46.6
Sample C Male 42.7
Sample D Male 41.8
Entorhinal cortex
nTPM: 52.6
Samples: 4

Max nTPM: 60.1
Min nTPM: 46.6
Sample A Female 47.4
Sample B Female 56.2
Sample C Male 60.1
Sample D Male 46.6
Ventral hippocampus
nTPM: 47.3
Samples: 4

Max nTPM: 52.2
Min nTPM: 38.0
Sample A Female 38.0
Sample B Female 49.3
Sample C Male 49.8
Sample D Male 52.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 128.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 129.0
Samples: 4

Max nTPM: 150.8
Min nTPM: 113.6
Sample A Male 116.7
Sample B Male 134.7
Sample C Female 113.6
Sample D Female 150.8
Hippocampal formation
nTPM: 67.8
Samples: 4

Max nTPM: 87.8
Min nTPM: 51.4
Sample A Male 87.8
Sample B Male 62.0
Sample C Female 51.4
Sample D Female 69.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 12.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 12.3
73732150 Antisense, RP_051121_04_A08, Mouse strain C57BL/6J (56 days, male) 14.0
68161484 Antisense, RP_041122_01_F03, Mouse strain C57BL/6J (56 days, male) 10.7

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