MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.6 nTPM
HPA Brain:32.5 nTPM
GTEx:28.6 nTPM
FANTOM5:5.6 Scaled Tags Per Million
Pig:87.2 nTPM
Mouse:0.8 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 32.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.3
2666 Male, age 74, left hemisphere 41.0
2019 Male, age 18, unknown 26.4
2411 Female, age 72, unknown 22.0
1830 Male, age 51, unknown 21.5
1827 Male, age 72, unknown 21.4
1870 Female, age 42, unknown 20.3
1833 Male, age 53, unknown 19.7
2586 Male, age 75, left hemisphere 19.5
2828 Female, age 72, unknown 19.0
2219 Male, age 76, both hemispheres 11.9
Dorsal raphe nucleus
nTPM: 32.5
1828 Male, age 53, unknown 41.1
2298 Female, age 72, unknown 37.2
2047 Male, age 72, unknown 35.2
2016 Female, age 72, unknown 24.7
2750 Male, age 76, both hemispheres 24.2
Inferior colliculus
nTPM: 21.7
2849 Male, age 72, unknown 23.6
2097 Female, age 72, unknown 23.5
1848 Female, age 42, unknown 23.3
1890 Male, age 53, unknown 16.2
Median raphe nucleus
nTPM: 29.6
2220 Male, age 76, midline 29.6
Periaquaductal grey, anterior
nTPM: 29.9
2502 Female, age 75, unknown 32.9
1947 Male, age 18, unknown 30.8
1795 Male, age 51, unknown 25.9
Periaquaductal grey, dorsal
nTPM: 21.9
2850 Male, age 76, both hemispheres 28.2
2464 Female, age 72, unknown 21.4
1840 Male, age 53, unknown 20.7
1831 Male, age 72, unknown 17.3
Periaquaductal grey, lateral
nTPM: 26.6
2272 Male, age 74, both hemispheres 32.2
2140 Male, age 76, both hemispheres 27.9
2053 Male, age 18, unknown 19.9
Pretectal area
nTPM: 22.4
1817 Female, age 42, unknown 29.0
2007 Male, age 72, unknown 27.1
1815 Male, age 53, unknown 26.4
2224 Female, age 72, unknown 26.3
1944 Female, age 72, unknown 24.2
1816 Male, age 51, unknown 21.7
2825 Male, age 18, unknown 21.4
2667 Female, age 75, unknown 19.1
2273 Male, age 74, both hemispheres 18.9
2316 Male, age 76, right hemisphere 17.9
2407 Male, age 75, both hemispheres 15.0
Red nucleus
nTPM: 21.0
1821 Female, age 72, unknown 28.1
1954 Female, age 42, unknown 23.6
2725 Female, age 75, unknown 23.0
2785 Male, age 18, unknown 22.1
2503 Female, age 72, unknown 21.6
2227 Male, age 72, unknown 20.6
2769 Male, age 72, unknown 20.5
2584 Male, age 75, left hemisphere 20.2
1865 Male, age 51, unknown 18.4
2588 Male, age 74, left hemisphere 18.3
2823 Male, age 76, right hemisphere 18.2
1904 Male, age 53, unknown 17.0
Substantia nigra
nTPM: 29.3
1916 Female, age 42, unknown 37.0
1941 Male, age 53, unknown 33.9
1851 Male, age 51, unknown 33.0
2241 Male, age 72, unknown 32.3
1889 Female, age 72, unknown 30.6
2699 Male, age 18, unknown 28.3
2665 Male, age 74, both hemispheres 26.8
2590 Female, age 75, unknown 26.3
2409 Female, age 72, unknown 24.1
2583 Male, age 75, right hemisphere 20.5
Superior colliculus
nTPM: 18.7
1895 Male, age 76, right hemisphere 23.2
2587 Male, age 74, left hemisphere 23.0
1839 Male, age 51, unknown 21.7
1796 Male, age 53, unknown 20.4
2668 Female, age 75, unknown 19.1
2261 Male, age 18, unknown 18.7
2087 Female, age 72, unknown 17.1
2664 Male, age 75, both hemispheres 15.6
1913 Female, age 42, unknown 14.2
1995 Male, age 72, unknown 13.8
Ventral tegmental area
nTPM: 25.9
2218 Male, age 76, both hemispheres 31.9
1915 Female, age 42, unknown 30.7
2410 Female, age 72, unknown 28.3
1942 Male, age 51, unknown 24.8
2021 Male, age 53, unknown 22.7
2223 Female, age 72, unknown 17.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 28.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.6
Samples: 139

Max nTPM: 72.4
Min nTPM: 9.0
Std nTPM: 11.5
Median nTPM: 27.0
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 72.4
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 67.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 63.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 63.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 62.7
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 53.7
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 51.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 51.6
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 50.8
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 49.3
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 48.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 5.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 5.6
FF:10158-103A5 76 years, female 5.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 87.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 85.3
Samples: 4

Max nTPM: 117.0
Min nTPM: 48.5
Sample A Female 117.0
Sample B Female 67.7
Sample C Male 107.8
Sample D Male 48.5
Midbrain
nTPM: 73.0
Samples: 4

Max nTPM: 88.7
Min nTPM: 60.3
Sample A Female 62.8
Sample B Female 60.3
Sample C Male 80.2
Sample D Male 88.7
Periaqueductal gray
nTPM: 69.6
Samples: 3

Max nTPM: 84.4
Min nTPM: 57.3
Sample B Female 57.3
Sample C Male 84.4
Sample D Male 67.0
Superior colliculi
nTPM: 87.2
Samples: 4

Max nTPM: 101.5
Min nTPM: 63.6
Sample A Female 101.5
Sample B Female 63.6
Sample C Male 82.9
Sample D Male 100.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.8
Samples: 4

Max nTPM: 0.9
Min nTPM: 0.7
Sample A Male 0.7
Sample B Male 0.9
Sample C Female 0.9
Sample D Female 0.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
1778 Antisense, RP_Baylor_102917, Mouse strain C57BL/6J (56 days, male) 0.1
68443098 Antisense, RP_050111_01_D03, Mouse strain C57BL/6J (56 days, male) 0.0

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