HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:3.3 nTPM
HPA Brain:31.1 nTPM
GTEx:3.3 nTPM
FANTOM5:32.1 Scaled Tags Per Million
Pig:18.5 nTPM
Mouse:4.8 nTPM
Allen mouse:10.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA019743Antibody HPA020124
Glial cells LowMedium
Neuronal cells MediumMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 31.1
Sample id Sample description nTPM
Hippocampus
nTPM: 26.5
1911 Female, age 85, right hemisphere 29.7
2529 Female, age 94, left hemisphere 28.1
2621 Female, age 67, right hemisphere 27.3
2148 Female, age 91, left hemisphere 26.6
1855 Male, age 76, left hemisphere 25.2
1898 Male, age 80, left hemisphere 21.9
Dentate gyrus
nTPM: 26.8
2531 Female, age 67, both hemispheres 32.0
2246 Female, age 85, both hemispheres 29.5
1927 Female, age 91, both hemispheres 26.5
2010 Male, age 76, both hemispheres 25.0
2528 Male, age 74, both hemispheres 24.8
2530 Female, age 94, left hemisphere 23.1
Entorhinal gyrus
nTPM: 28.7
2686 Male, age 75, right hemisphere 31.9
2613 Female, age 94, left hemisphere 31.5
1938 Female, age 85, left hemisphere 31.0
2117 Female, age 91, right hemisphere 27.9
1787 Male, age 76, left hemisphere 25.5
2764 Male, age 80, right hemisphere 24.5
Hippocampus, CA1
nTPM: 29.3
2045 Male, age 76, both hemispheres 32.6
2082 Female, age 91, right hemisphere 30.0
1873 Female, age 85, both hemispheres 29.0
2749 Male, age 80, left hemisphere 27.5
2527 Male, age 74, both hemispheres 27.2
Hippocampus, CA2
nTPM: 26.5
2437 Female, age 94, left hemisphere 30.8
1940 Female, age 85, left hemisphere 27.8
1892 Male, age 76, both hemispheres 27.5
2113 Female, age 91, right hemisphere 27.1
1963 Male, age 80, left hemisphere 23.1
2249 Male, age 74, both hemispheres 22.5
Hippocampus, CA3
nTPM: 29.7
2620 Female, age 94, left hemisphere 33.6
2861 Female, age 67, both hemispheres 33.1
2137 Male, age 80, left hemisphere 28.4
1891 Female, age 85, both hemispheres 28.1
1867 Male, age 76, both hemispheres 27.6
2436 Male, age 74, both hemispheres 27.6
Parahippocampal cortex
nTPM: 30.7
2693 Female, age 94, both hemispheres 35.6
2532 Female, age 72, left hemisphere 34.4
2622 Female, age 67, right hemisphere 33.8
1850 Male, age 80, both hemispheres 32.0
2250 Female, age 67, right hemisphere 31.5
2245 Female, age 91, both hemispheres 31.3
1933 Female, age 85, both hemispheres 28.6
2018 Male, age 76, both hemispheres 27.9
2692 Male, age 74, both hemispheres 26.7
1990 Female, age 91, right hemisphere 25.0
Perirhinal gyrus
nTPM: 31.1
2848 Male, age 76, right hemisphere 34.2
2521 Female, age 94, right hemisphere 32.9
1841 Female, age 85, right hemisphere 32.4
1847 Female, age 91, left hemisphere 28.1
1794 Male, age 80, right hemisphere 27.8
Subiculum
nTPM: 28.0
2438 Female, age 94, left hemisphere 36.5
1901 Male, age 80, both hemispheres 28.7
1977 Female, age 85, both hemispheres 28.3
2042 Male, age 76, both hemispheres 25.6
2619 Male, age 74, both hemispheres 25.1
2729 Female, age 91, right hemisphere 23.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 3.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 3.3
Samples: 197

Max nTPM: 5.9
Min nTPM: 1.1
Std nTPM: 0.8
Median nTPM: 3.1
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 5.9
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 5.7
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 5.5
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 5.5
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 5.3
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 5.3
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 5.2
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 5.2
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 5.2
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 5.0
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 5.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 32.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 32.1
FF:10153-102I9 76 years, female 39.3
FF:10169-103B7 60 years, female 24.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 18.5
Pig sample Sample description nTPM
Subiculum
nTPM: 16.2
Samples: 4

Max nTPM: 16.4
Min nTPM: 15.8
Sample A Female 16.4
Sample B Female 16.0
Sample C Male 16.4
Sample D Male 15.8
Dorsal hippocampus
nTPM: 15.9
Samples: 4

Max nTPM: 18.4
Min nTPM: 13.6
Sample A Female 13.6
Sample B Female 16.0
Sample C Male 15.6
Sample D Male 18.4
Entorhinal cortex
nTPM: 18.5
Samples: 4

Max nTPM: 20.3
Min nTPM: 16.9
Sample A Female 19.5
Sample B Female 17.2
Sample C Male 16.9
Sample D Male 20.3
Ventral hippocampus
nTPM: 15.7
Samples: 4

Max nTPM: 17.0
Min nTPM: 14.3
Sample A Female 14.7
Sample B Female 16.6
Sample C Male 14.3
Sample D Male 17.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 4.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 4.8
Samples: 4

Max nTPM: 4.9
Min nTPM: 4.7
Sample A Male 4.7
Sample B Male 4.7
Sample C Female 4.7
Sample D Female 4.9
Hippocampal formation
nTPM: 4.4
Samples: 4

Max nTPM: 5.3
Min nTPM: 3.7
Sample A Male 4.0
Sample B Male 5.3
Sample C Female 4.7
Sample D Female 3.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 10.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 10.4
69013104 Antisense, RP_050309_02_A05, Mouse strain C57BL/6J (56 days, male) 10.4

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